Ochotona princeps (American pika): 105942039
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Entry
105942039 CDS
T07609
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRAF7-like
KO
K10646
E3 ubiquitin-protein ligase TRAF7 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
105942039
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105942039
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
105942039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
WDR55
Beta-prop_SCAP
Beta-prop_EML
EIF3I
NBCH_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
zf-C3HC4_2
zf-TRAF
zf-RING_UBOX
zf-C3HC4
WD40_MABP1-WDR62_2nd
zf-C3HC4_3
WD40_like
Beta-prop_SPT8
Sina_ZnF
zf-C3HC4_4
Beta-prop_IFT140_2nd
Crescentin
Beta-prop_Nup120_160
Filament
DUF1664
Sina_RING
Motif
Other DBs
NCBI-GeneID:
105942039
NCBI-ProteinID:
XP_036350422
LinkDB
All DBs
Position
13:54767976..54794825
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AA seq
727 aa
AA seq
DB search
MLLLVSLVLNNLSVLEKKAGANKSVLISANPPTSLRSVAITCCRWGGRHQRTLDASLEHE
LGQERHYSCFSWGPADLPAPNTAAGTTTETNFGPAFSGVTTITKADGTGTYKQHYRSPSS
SSTLAYLPRDEEDSMPPITTPRRSDSAVSVRSLHSESSLSLRSTFSLAEEEELEPLVLAE
QPSVKLCCQLCCSVFKDAVFTTCGHTFCRRCALKSKKCPLDHAKLTVEVNNIAVAEQIRK
LFIYCRHGYRVAGAGKPPVFEVDPXGCPFTIKLSARKEHKSSCDYRPVQCPNNTGCAPLL
TMNLEAHVKEYEHIRCPHSKYGCTFVRNQDTYETHLETCHFEGQKEFMQQTNDRFHEMHV
ALAQKEQEIGFLRSMVGKLSERVDQLEKILELKFDVLDENRSKLSEDLMEFRMDTSMLND
ELSHINARPDMGILGSXDPQQIFKCKGAFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVW
DTCTTHKCQKTLEGHDGILLALCIQGCKLYSGSANRTIIVWDIQNLQKVNIIRAHNNPVC
MLVASDNMFFSGSLKAIKVWDIMGTELKLKKELTGLKHWLRALVATQSYLYSGSYQTIKI
WDIRTLDCIHLLQTSGGSVYSIAVTNHCIMCGTYENLSHVWDIESREQVQTLTGHVGTGY
ALAVISTPDQTKVFSASYSQSLRVWSMDNMICTQTLLRHQDSVTALAVSRGRLFSGAMDS
TVKVWTC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgttggtgagcttggtcctaaataatttatctgtgcttgaaaagaaggctggt
gccaacaagtcggttttaatttcagcgaatccaccaacttcattacggtctgtggccatc
acctgctgccggtgggggggccgccatcagcggaccctagatgcctccctagaacatgaa
ctcgggcaagaacgccactacagctgcttctcctgggggcctgccgacctgcccgcccct
aacactgctgctgggaccacaacggaaaccaactttgggcctgctttttcaggcgtcacc
accatcacgaaagctgacggaactggcacttacaagcagcattacaggtcgccctcctcc
tccagcaccctggcctacttgccgcgggatgaggaggatagcatgccccccatcaccaca
ccccgccgctccgactcggccgtctccgtccgctccctgcactccgagtccagcctgtcc
ctgcgctcgactttctcactggccgaggaggaggagctggagccgctggtgctcgctgag
cagccctcggtgaagctgtgctgccagctctgttgcagcgtcttcaaggacgctgtgttc
accacgtgtgggcacacgttctgtagaagatgcgctttgaagtcaaagaagtgccccctg
gaccacgccaagctgacggttgaggtgaacaacattgcggtggccgagcagatcaggaag
ctcttcatctactgcaggcacggctaccgggtggcgggcgctgggaagccccccgtattc
gaagtggatcctngtgggtgccccttcaccatcaagctcagcgcccggaaggagcacaag
agcagttgtgactacagacccgtgcagtgccccaacaacactggctgcgccccgctcctc
accatgaatctggaggcgcacgtcaaagagtacgaacacatcaggtgtcctcactccaag
tacgggtgcacattcgtcaggaaccaggacacatatgagacgcacctggagacttgccac
ttcgagggtcagaaggagttcatgcagcagacaaacgaccgcttccacgagatgcatgtg
gcgctggcccagaaggagcaggagattggcttcctgcgctccatggtgggcaagctctcc
gaaagggtcgaccagctggagaagatcctggaactcaagttcgatgtgctggatgagaat
cggagcaagctcagtgaggacctcatggagttccgaatggatacatccatgctgaatgac
gagctgtcccacatcaatgcgcggccggacatgggcatcctggggtcttaggaccctcag
caaattttcaagtgcaaaggggccttcgtgggccaccagggcccagtctggtgtctctgt
gtctattccatgggagacctgcttttcagcggctcctctgacaagaccatcaaggtgtgg
gacacatgtaccacccacaagtgccagaagacactggagggccacgatggcattttgctg
gcactctgcatccaggggtgcaagctctacagtggctcagcaaaccgcaccatcattgtg
tgggacatccagaacctgcagaaagtgaacatcatccgggcccacaacaaccccgtgtgc
atgctggtcgcctctgacaacatgttctttagtggctccctgaaggccatcaaggtctgg
gatatcatgggcactgaactgaagctgaagaaggagctcacgggcctcaaacactggtta
cgggctctggtggccactcagagctacctgtacagcggctcctaccagacaatcaagatc
tgggacatccggacccttgactgtatccacctcctacagacgtctggcggaagtgtctac
tcaatcgcggtgacgaatcactgcatcatgtgtggcacctacgagaacctcagccatgtg
tgggacattgagtccagggaacaggtgcagaccctgacaggccacgtgggcacaggatat
gccctggcagtcatctcaacgccggaccagacgaaagtcttcagcgcatcctactcccaa
tctttgagggtctggagcatggacaacatgatctgcacacagaccctgctgcgccaccaa
gacagcgtgacagcactggccgtgtcccggggccggctcttctcaggagccatggacagc
accgtgaaggtttggacttgctag
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