Ochotona princeps (American pika): 118758004
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Entry
118758004 CDS
T07609
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
118758004 (SOX1)
Transcription factors [BR:
opi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118758004 (SOX1)
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
118758004
NCBI-ProteinID:
XP_036349291
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All DBs
Position
8:74225014..74379574
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AA seq
269 aa
AA seq
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MYSMMMETDLHSPGGQAPTNLSGPAGAGGGGGGSGGGGGGGGGAKANQDRVKRPMNAFMV
WSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKY
RPRRKTKTLLKKDKYSLAGGLLAAGAGSGGVGAAAMAVGAVQANVKASAFPLSEMELGDN
PDGAQEGVSGRLGAVPSPPLLSTWESLGLRLQPKTHLVAAPTHPKPASGLQVHSLPGPRS
HAVRRLRGSSEPLADPKTSSCTRVRKAGS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagacggacctgcactcgcccggcggccaggcgcccacgaac
ctatcgggcccggccggggcgggcggcggtggcggcggcagcggaggaggcgggggcggc
ggcgggggcgccaaggccaaccaggaccgggtcaagcggcccatgaacgccttcatggtg
tggtcccgtggacagaggcgcaagatggcccaggagaaccccaagatgcacaactcggag
atcagcaagcgcctgggcgcagagtggaaggtcatgtccgaggccgagaagcggcccttc
atcgacgaggccaagcggctacgcgcgctgcacatgaaggagcacccggattacaagtac
cggccgcgccgcaagaccaagacgttgctgaagaaggacaagtactcgctggctggcggg
ctgctggcggccggagcgggcagcggcggcgtgggcgcggcggccatggccgtgggcgcg
gtgcaggccaacgtgaaagccagtgccttcccgctctctgagatggagttaggtgacaac
cctgatggggcccaagagggcgtcagtgggcgcctgggcgccgtcccctcgcctcccctc
ctgagcacctgggaatcgctgggcttgaggctgcagccgaagacacacctggtggccgcc
cccacgcacccaaagcccgcctctggcctccaggtgcacagcctgcccgggccgcgcagc
catgctgtcaggcgcctccgaggcagcagcgagcccttggcggaccccaagacgtcttcc
tgcacgcgtgtgaggaaagcaggctcctga
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