Ochotona princeps (American pika): 118760109
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Entry
118760109 CDS
T07609
Symbol
SYNPO
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118760109 (SYNPO)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
118760109
NCBI-ProteinID:
XP_036352939
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Position
3A:complement(23328518..23353937)
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AA seq
925 aa
AA seq
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MLGPHLPPPPLGPSERRPTPCAFQIPDGSYRCLALEAEESSGEEGLQGEVGLVDLEEEVV
ASSSEASSVCTATQGAPKLPRCSREPPAGPQSDSRGSQNWDTVKAQKVMTNNSGPRVAPK
PALGRSTSFTEKDLKEAKAWSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTLESHGQR
GRKPGQESLRSLPDSPKGHVQRELSLSVTLLPEPAPPSQPGPQSPNRGDPGRSMEGYSEE
ASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQSRETQQSPPTPPPAEDHSPAT
DANQNLSSASTTLTATPASNSTHNPPATDVNQNPVATASPPANNLQNTSKGLFSSNGSVP
DSQPPSAPGPDGQSPAQAGEEVMFSTLLIDKVSTPLTTTSAFSREVTPISSSGPHGPDFL
SSSLLIDAQPSAFRLASEPDMCGQAAATTPTKAYSEVHLTLAKPPSVVNRTARPFGMQAS
SGSGQVERSPMVERRHLGEKAVAPQPTTMADRSPRPQRHVMSPSPMVERRLVGQRSPVME
RRPLGHFTPPPTYAETLSAAPPASRVRSPPSYSALYPSSDPKPSHRKGQAAPASKTGILD
ESMARRGSRKSMFTFVEKPKTTPNPDLLDLVQTADEKRRQRDQGEAGVEEEPFALGAEAS
NFQQELVPRDRASPAAAAEETVPEWASCLKSPRIQAKPKPRPNQNLSEASGKGAELYARR
QSRMEKYVIESAGPTAAELARCPSPTMSLPSSWKYSTSAPGGLRVASRSPARTPPASLYH
GYLPENGVLRPEPTKQPPQYHMRPSLFALSPIKEPARSLPRAASPRAASPAKPSSLDLVP
SLPKASLPPSPALPRPARSSPGLYTSLGQDGLQPTAVSPTYGSDVSPVSPSRAWSPRAKQ
APRPSFSTRTAGIEAQVWKPSFCFK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcccccacctgccacctccgccccttgggcccagtgaaaggaggcctaccccc
tgtgccttccagatcccggatgggagctacagatgcctggctctggaggcagaggagagc
agtggtgaggagggcctgcagggggaggtagggctcgtggacctggaagaggaggtggtg
gccagcagcagtgaggccagctctgtctgcacagccacccaaggggcaccaaagctgccc
agatgctccagggagccaccagcagggccccagtctgacagcaggggcagccagaactgg
gacacagtgaaggcccagaaggtaatgacaaacaactctggaccgagggtggccccaaag
ccagccttgggccggagcactagcttcactgagaaggacctgaaagaggcaaaagcgtgg
agccagcagatcgcggcccagctgaccaccccacctagctccaactcccgtggtgttcag
ctcttcaaccggcgtcggcagcgagtgaacgagttcaccttggagagccacggccagcgg
ggacggaagcccggccaggaatccctcagatcactccctgacagccccaagggccatgtg
cagagggagctcagcctgagcgttaccttactgcctgagccagcccctccaagccagcct
ggtccccagagccccaacagaggggaccccggccgcagcatggagggctactctgaggag
gccagcctgctgcggcacctggagaaggtggccagtgaggaggaggaggtcccactggtg
gtttatctgaaggagaatgcagccctgctgacagccaatgggctgcatctgtcccagagc
cgggagacccagcagtccccaccgacccctcctccagctgaggaccatagcccagccaca
gatgccaaccaaaacctctcctcagccagtaccactctcactgccacaccagcttccaac
agcacccacaacccaccagccacagacgtcaatcagaacccagtggcaactgccagccca
ccggccaacaacctgcagaacacctccaagggactgttctcctccaatggctctgttccg
gattcccagccgcccagtgccccaggccctgatgggcaatccccagcacaggcaggggag
gaggtgatgttcagcacactgctcatcgataaggtgtcaaccccactgaccaccaccagc
gccttctcccgggaagtcacacccatctccagctctgggccccacggccccgattttctg
tcaagttccctactcatcgatgcacagcccagcgccttcaggctggcatcagaaccagac
atgtgtggacaggcagctgccaccacacccaccaaggcatacagcgaggtccacctcaca
ctggccaaacccccttcggtggtcaacaggacggccaggccctttgggatgcaggcatcc
agtggcagcggccaagtagaaaggagccccatggtggagagacggcatcttggggagaag
gctgtggctccccagcccacaactatggcagacaggagcccacggccacagagacacgtg
atgtcccccagccccatggtggagaggaggctggtggggcagcgaagcccagtcatggag
agacgtcccttggggcacttcaccccgccccccacctatgccgagaccctgtcagcggct
cccccagcttcccgagttcgctctcccccatcctactctgccttgtaccccagctctgac
cccaagccttctcatcggaaaggccaggcagctcctgccagcaagacaggaattttggac
gagtcaatggcccgccggggcagccgcaagtccatgttcaccttcgtggagaagcccaaa
accactccgaaccctgacctgctggatctggtgcaaacggctgatgagaagcgcaggcag
agggaccagggggaggctggcgtggaggaggagcccttcgccctgggtgccgaggcctcc
aacttccagcaggagctggtccctcgggacagggccagtcctgcagcggcagcagaggaa
accgtgcccgagtgggcctcctgcctcaagtccccccgcatccaggccaagccaaagcct
agacccaaccagaacctgtcagaggcctcggggaagggggctgagctgtatgcccgccgc
cagtcacgcatggagaagtatgtcatcgagtctgcaggcccgacagccgccgagctggct
cgctgtccctcccctaccatgtccctgccttcgtcctggaaatactccactagtgctccc
gggggcttgcgagtggcctctcgcagcccggcacggaccccacctgcctctctctaccat
ggctacctgcccgagaacggggtcctgcgtccagagcccaccaagcagccaccgcagtac
cacatgcgcccctcgctcttcgccctctcgcccatcaaagagcctgccaggtccttgccc
agagctgcctcacccagagctgcctccccagccaaacccagctccctggacttggtgccc
agtctgcccaaggcatccctcccaccatcccctgcactgccaaggcctgcccgctcctct
ccaggcctctacacctcgctgggccaggatggcctgcagcccactgctgtgagccccacc
tacggcagcgacgtctcccccgtgtcgccctccagggcctggtctcccagagccaagcag
gcacccaggccttccttctctacccgcactgccgggattgaggctcaggtgtggaaacct
tccttctgcttcaagtaa
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