Oceanithermus profundus: Ocepr_0824
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Entry
Ocepr_0824 CDS
T01369
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
opr
Oceanithermus profundus
Pathway
opr03030
DNA replication
opr03410
Base excision repair
opr03420
Nucleotide excision repair
opr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ocepr_0824
03410 Base excision repair
Ocepr_0824
03420 Nucleotide excision repair
Ocepr_0824
03430 Mismatch repair
Ocepr_0824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opr03032
]
Ocepr_0824
03400 DNA repair and recombination proteins [BR:
opr03400
]
Ocepr_0824
Enzymes [BR:
opr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ocepr_0824
DNA replication proteins [BR:
opr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ocepr_0824
DNA repair and recombination proteins [BR:
opr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ocepr_0824
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ocepr_0824
MMR (mismatch excision repair)
DNA ligase
Ocepr_0824
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ocepr_0824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADR36281
UniProt:
E4U866
LinkDB
All DBs
Position
complement(829165..831177)
Genome browser
AA seq
670 aa
AA seq
DB search
MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPELRSPASP
TNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARALGTEPPLEYALEYKID
GLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRLEGAPPRLEVRGEVYMPRE
VFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAELRARTQ
LELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVNDLEAQRR
LGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTVSRVTLH
NKAFIEELDARVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPIVFPYHCPECGANLVEDG
KIHRCPNPLCPAKAFQQLRHWASRRAMDVQGLGEKLIEQLLEKGLVKDAADLYRLGKEDL
AGLERMGEKSAENLLVQLEESKGRGLERALYGLGIPQVGEALARTLARRFGTIEKLMEAG
EEELEAVPDVGPVTAAEIRRALADERMRSLIRRLKEAGVSFEAKQAQPAEQPLAGLTIVL
TGELSRPRSEVKEELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLA
ALLAERGAAG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtgacgagggaagaagccgcgcggcgggtggccgagctgacctgggccatccggcgtcac
aaccacctctactacgtgctcgaccggcccgagatctccgacgccgagtacgacgcgctg
gtgcgggagctggccgagctggaggccgcctttcccgagctgcgctcgcccgcctcgccc
acgaaccaggtgggggcgggggtgctgggcgccagcttcgagccggtcacgcacccgacc
ccgctctattcgctggacaacgccttcggccccgacgagatcgccgccttcgaggagcgc
gtcgcccgggcgctgggaaccgagccgccgctggagtacgcgctcgaatacaagatcgac
ggcctctcgatcaacctgctctacgaaggcggccgcctcgtctggggcgccacccgcggc
aacggccgggtaggcgaggaggtgacccagaacctgctgaccgtccgggacgtcccctcg
cggctcgagggcgcccccccgcgactggaggtgcgcggcgaggtctacatgccgcgggag
gtcttcctggagctcaaccgcgcgcgcgaggaggccggggagctgcccttcaagaacccc
cgcaacgccgccgccggcgcggtgcggcagaaggacccgcgcatcgccgccgagcgccgg
ctcgcggcctacttctacggcgtgggcgagggggcggcggaactgagggcgcgcacgcag
ctcgagctgctcgaccgcctggaggccctgggcctgccggtagagccccaccgaaggagc
gccgtgggcgcggccggggtcgaggaggcctaccggcagatgctcgcccgccgcgacgcg
ctgcccttcgaagccgacggggcgaccgtcaaggtgaacgacctggaggcgcagcgccgc
ctgggtcacacggccaagtcgccgcgctgggccgtcgcctacaagttcccggccgaggaa
aaggaaacccgtatcgaagaggtcgtcttccaggtgggccgcaccggccgcatcaccccg
gtggcccacctgacgccggtccagctcgacggcaccaccgtcagccgcgtcaccctgcac
aacaaggccttcatcgaggagctggacgcccgcgtgggcgacgccgtgcgcctgcacaag
tcgggcggcatcatccccgagatcttgcgggtaatcaaggaaaagcgaactggcaaggaa
gagccgatcgtcttcccctatcattgtcccgaatgcggtgccaatctagtggaagacggc
aagatccaccgctgccccaaccccctctgccccgccaaggccttccagcagctgcgccac
tgggcgagccgccgggcgatggacgttcagggcctgggcgaaaagctgatcgagcagctg
ctggaaaaggggctggtgaaggacgccgccgacctctaccggctcggtaaggaagacctg
gccggcctggagcggatgggcgagaagagcgcggagaacctgctcgtgcagctcgaggag
agcaagggccgggggctggaacgcgccctctacggcctcggcatcccccaggtgggcgag
gcgctggcgcgcacccttgcccggcgcttcgggacgatcgagaagctgatggaggccggc
gaggaggagctggaggccgtgcccgacgtcggcccggtgaccgccgccgagatccgccgg
gcgctcgccgacgagcgcatgcgcagcctgatccggcggctaaaggaagccggggtcagc
ttcgaagccaaacaggcccagcccgccgagcagccgctcgccgggctgacgatcgtcctc
accggcgagctcagccgtccgcggagcgaagtgaaagaggaactcgaggccctgggggcc
aaggtggccggctcggtgagccgcaagaccagctacgtcgtcgccggccccggcgccggc
agcaagctgaaaaaggcccgggagttgggggtgccggtgctcgacgaggcgggcctcgcc
gccctgctcgccgaacggggcgcggccgggtag
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