Zophobihabitans entericus: IPMB12_05575
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Entry
IPMB12_05575 CDS
T06493
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03030
DNA replication
orb03410
Base excision repair
orb03420
Nucleotide excision repair
orb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPMB12_05575 (ligA)
03410 Base excision repair
IPMB12_05575 (ligA)
03420 Nucleotide excision repair
IPMB12_05575 (ligA)
03430 Mismatch repair
IPMB12_05575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orb03032
]
IPMB12_05575 (ligA)
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_05575 (ligA)
Enzymes [BR:
orb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IPMB12_05575 (ligA)
DNA replication proteins [BR:
orb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IPMB12_05575 (ligA)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IPMB12_05575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPMB12_05575 (ligA)
MMR (mismatch excision repair)
DNA ligase
IPMB12_05575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPMB12_05575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
5_3_exonuc
Zf_2nd_IFT121
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QIQ21195
UniProt:
A0A6G9IAD3
LinkDB
All DBs
Position
1242434..1244485
Genome browser
AA seq
683 aa
AA seq
DB search
MTSPSLATLQQLKDLRKQLRHHEYQYHVLDNPEIPDVEYDKLMQQLIALEQQYPELITAD
SPTQRVGATPLSELGTVKHEKPMLSLDNVFEEAGFLAFYKRITDRLDFTDSDQIDFCCEL
KLDGLAVSLLYENGELIQAATRGDGTTGEDITSNVRTIKAIPLRLEGENIPPRIEIRGEV
YMTHKGFEKLNQQAEKNGEKVFANPRNAAAGSLRQLDPSITNKRPLTFFCYGVGIVDETT
LPKTHYDRLMLFKSWGIPVSDLVRICKTPEEVLSYYHEIENKRMSLGFDIDGVVIKVNDI
ALQDRLGYVARAPRWATAFKFPAQEQITQLKQVDFQVGRTGAITPVARLVPVQVAGVVVS
NATLHNSDEIERLNIREGDFVIIRRAGDVIPKVVSVVLEKRPADTKEIVFPTHCPVCHSL
IVRDDDQAISRCSGGLICPAQRKEALKHFVSRKALDVEGLGDRIIEQLVDKEYVSNPADL
YRLNIRELCTLDKVGEKLANNLLESLANSKSTTLNRFIYALGIPNVGEVLAENLANELGS
LEAIASSNIEQLSTVTDVGKIVAESIQNFLQEPHNQSVIAQLISDEIGIHWPAPSTTNQI
VHNSVFKDKVIVLTGTLTEMTRDEAKAKLKRFGAKVTGSVSKNTDLVIAGASAGSKLTKA
EELGIKVIDEASMVQLFAEAEQN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctccttctcttgctactttacagcaactaaaagacttacgtaaacaactccgc
catcatgaataccaataccatgttctggataatccggaaattcctgatgttgaatacgat
aagctcatgcaacaattaattgcgcttgagcagcaatatccggaactcattaccgcagat
tctccgactcaacgtgtcggtgcaacaccgctgagtgaacttggtacagttaaacatgaa
aaaccaatgctttcactggataatgtgtttgaagaggctggttttttagccttttataaa
cgtatcactgatcgcttagattttactgactcggatcagattgatttttgttgtgaatta
aaactagacggcttagcggttagtttactatatgaaaatggtgaactgattcaggcagca
acacgtggtgatggtacaaccggtgaggatatcaccagtaatgtccgaactattaaagcg
attccattacgtctggaaggagagaatattcctcctcgtattgaaattcgcggtgaagtc
tatatgactcacaaaggatttgaaaaactcaatcaacaagctgaaaaaaatggtgaaaag
gtttttgctaatcctcgtaatgctgcggccgggtctttacgccagcttgatccaagtatt
accaataaacgcccgttaactttcttctgttatggtgtgggtatcgttgatgaaacaaca
ctgcctaagactcattatgacaggttgatgttatttaaatcatggggtattcctgtcagt
gatttagtgcgtatctgtaaaacacccgaagaagtacttagctattatcatgaaattgaa
aataagcgtatgtcactgggttttgatatcgatggcgtagttattaaggtcaatgatatt
gctctgcaagataggcttggttatgttgcacgcgcacctcgctgggcaactgcatttaaa
tttccggctcaggaacaaattacccaattaaaacaagttgatttccaggttgggcgcacc
ggtgctattactcctgttgcacgtttagttccggttcaggttgctggtgttgtggtgagt
aatgcgactttacataacagtgatgaaattgaacgcctaaatattcgtgaaggggacttt
gtgattattcgccgtgcgggtgacgtcatcccgaaagttgtctctgtagtactggaaaaa
agacctgctgatactaaagagattgtgtttcctacccattgtccggtttgccactcactg
attgtacgtgatgacgatcaggctatttctcgttgttctggtggtttaatttgcccggca
cagcgtaaagaagcgctaaaacattttgtctcacgtaaagcgctggatgttgaaggactt
ggtgatcgaattatcgaacagttggtggataaagaatacgtctctaatccggcagattta
tatcgtctaaatattcgtgagctttgtactttagataaagtgggtgagaagttagcgaat
aacttacttgagtcactggcaaactctaaaagcacgacactaaatcgttttatttatgca
ctgggtattcctaatgtaggggaagtgctggcggaaaatctggcaaacgagctgggctct
ttagaggcgattgcgagttctaatattgagcaactcagcacggtgactgatgtgggtaaa
attgtggcagaaagtattcaaaactttttgcaagaaccacataatcagtcggttattgct
caactcattagtgatgagatcgggattcactggccggcaccatcaaccacgaatcaaatt
gtgcataacagtgtatttaaagacaaggtgattgtcttaaccggaacgttgaccgagatg
actcgtgatgaagccaaagctaagttaaaacgttttggtgctaaggtgacgggtagtgta
tctaaaaatacggatttagttattgcaggtgcttctgccggctctaaattgaccaaagca
gaagagctgggcattaaagttattgatgaagcaagtatggtacagttatttgctgaagct
gaacaaaattaa
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