Ornithobacterium rhinotracheale DSM 15997: Ornrh_1979
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Entry
Ornrh_1979 CDS
T02145
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
orh
Ornithobacterium rhinotracheale DSM 15997
Pathway
orh03030
DNA replication
orh03410
Base excision repair
orh03420
Nucleotide excision repair
orh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ornrh_1979
03410 Base excision repair
Ornrh_1979
03420 Nucleotide excision repair
Ornrh_1979
03430 Mismatch repair
Ornrh_1979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orh03032
]
Ornrh_1979
03400 DNA repair and recombination proteins [BR:
orh03400
]
Ornrh_1979
Enzymes [BR:
orh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ornrh_1979
DNA replication proteins [BR:
orh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ornrh_1979
DNA repair and recombination proteins [BR:
orh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ornrh_1979
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ornrh_1979
MMR (mismatch excision repair)
DNA ligase
Ornrh_1979
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ornrh_1979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
RNA_lig_T4_1
Auto_anti-p27
Zn_ribbon_NUD
5_3_exonuc
HHH
Zn_ribbon_6
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AFL98123
UniProt:
I4A2D9
LinkDB
All DBs
Position
2011411..2013396
Genome browser
AA seq
661 aa
AA seq
DB search
MSIEEKIQQLRQEINHYNYQYYVLDQSEISDFDFDMKLKELQDLEEQYPEFFDPNSPTQR
VGGSVTKNFPTVQHAYRMYSLGNSYSEDDLLEWTQRVEKDLGEVTYFCELKYDGASISLT
YENGNLTHAVTRGDGIMGDEITTNVRTIRSIPLKINGECPPVFYMRGEIIMPLKAFNALN
DEREELGLEPFMNPRNTASGTLKLQDSSEVAKRGLEALMYNVAGENLPFDSQQNMLETAR
NWGFKVPNAGKKCNNIQEILEFVHYWDQKRHELPYETDGVVVKVNSMVQQDELGFTAKSP
RWAIAYKFKAEQAYTKLNSIDYQVGRTGAVTPVANLNPVLLAGTTVKRASLHNADIIEKL
DVRIGDTVIVEKGGEIIPKIVGVDLSQRPAGTEPTKFIAECPECGTPLKRNEGEAAYYCP
NEDGCAPQIKGRLVHFVSRRAMDIESIGAETIALLYQQNLVNNIADLYRLKKEDILPLER
MAEKSADNIIHALEESKKMPFAKVLYGIGIRYVGETVAKKLVKAFPSIDELMQASIEELE
AVDTIGTRIAESVKEYFAKPEHQQLIEDLKSFGLQMQAEQQEMLSQKLEGLSFLFTGKLT
AFTRDQAKEMVEKNGGKIVSSVSKNLNYLVVGEKAGSKLKKAQAIESIKIITENQFLDLI
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgaagaaaaaatccagcaactacgccaagaaatcaatcattataattaccaa
tattatgttttagatcaatcggaaatctctgattttgatttcgatatgaaactaaaggaa
ttgcaagatttagaggagcagtatcctgagttttttgatccaaactcgcctacgcaaaga
gtgggaggtagtgtaactaaaaatttcccgaccgtgcagcacgcttatcgcatgtattct
ttaggaaactcttattcagaagacgatttgctcgagtggacacagcgtgtggaaaaagat
ttaggcgaggttacatacttttgtgagcttaaatacgatggggcttcaattagtttaacc
tatgagaacggaaacctcacgcatgccgtaacgcgtggcgatggcatcatgggcgatgag
attacgaccaatgttcgcacaatccgtagcattccgttgaaaatcaatggagagtgccct
cctgtgttttatatgcgaggtgaaatcattatgcccttaaaagcttttaatgcgttgaac
gatgagcgagaagaattaggtttagaaccatttatgaatccgcgtaacactgccagcgga
acactcaaattgcaagattcaagcgaggtggctaagcgaggattagaggctttaatgtat
aatgtggcgggcgaaaatttaccatttgattcgcaacaaaacatgctcgaaactgctcga
aactggggatttaaagtgccaaatgcaggaaaaaaatgcaataacattcaagaaatttta
gaatttgtgcattattgggatcaaaaacgccatgaattgccttacgaaaccgatggagtc
gtggtaaaggtaaattctatggttcagcaagatgagcttgggtttacagccaaatcgcca
agatgggctattgcttacaaattcaaagccgaacaagcttatacaaaattaaattcaatt
gattatcaagtagggagaacgggagctgtaacgcctgtggcgaatctaaaccctgtgctt
ttggcgggaaccacggtgaaaagggcttctctgcacaatgccgatatcatcgagaaatta
gatgtaagaattggtgataccgtgattgtagaaaaaggcggagaaattatcccgaaaatt
gtgggcgtagatttgagtcaaagaccagcaggaacggagcctacgaagtttattgcagaa
tgtcccgagtgcggaacgccactcaaaagaaacgagggagaagcagcatattattgccca
aacgaggacggttgcgcgccgcaaatcaaagggagattagtgcattttgtgagtcgtcgt
gcgatggatatagaaagcattggagcagaaaccattgcacttttgtatcagcaaaatctt
gtgaataatattgcagatttataccgattgaagaaagaagacattttgccactggaacgc
atggcggagaagtcggcagacaatatcattcacgcattggaagagtccaaaaaaatgcct
tttgccaaggttttatacggaataggtattcgctatgtgggcgaaacggtggctaaaaaa
ttagtcaaagcttttccgagtatagatgaattaatgcaagcttcgatcgaagagctggag
gcggtagataccatcggaactcgcattgccgagagtgtaaaagaatattttgcaaagcca
gagcatcagcagttaatagaggatttaaagtcttttggactacaaatgcaggcagagcaa
caggaaatgctttctcaaaaattagaaggtttaagtttcttgtttacagggaaattaacg
gcttttacccgtgatcaagccaaagaaatggtggagaaaaacggagggaaaatcgtttct
tcggtgtctaaaaacttaaattatttggtagtgggcgaaaaagcaggttcaaaactgaaa
aaagctcaagccatagaaagcataaaaattattacagaaaatcaatttttagatttgatt
caatag
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