Ornithobacterium rhinotracheale ORT-UMN 88: Q785_09765
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Entry
Q785_09765 CDS
T03303
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ori
Ornithobacterium rhinotracheale ORT-UMN 88
Pathway
ori03030
DNA replication
ori03410
Base excision repair
ori03420
Nucleotide excision repair
ori03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ori00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q785_09765
03410 Base excision repair
Q785_09765
03420 Nucleotide excision repair
Q785_09765
03430 Mismatch repair
Q785_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ori03032
]
Q785_09765
03400 DNA repair and recombination proteins [BR:
ori03400
]
Q785_09765
Enzymes [BR:
ori01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q785_09765
DNA replication proteins [BR:
ori03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q785_09765
DNA repair and recombination proteins [BR:
ori03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q785_09765
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q785_09765
MMR (mismatch excision repair)
DNA ligase
Q785_09765
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q785_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
RNA_lig_T4_1
Auto_anti-p27
Zn_ribbon_NUD
5_3_exonuc
HHH
Zn_ribbon_6
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AIP99882
LinkDB
All DBs
Position
1963114..1965099
Genome browser
AA seq
661 aa
AA seq
DB search
MSIEEKIQQLRQEINHYNYQYYVLDQSEISDFDFDMKLKELQDLEEQYPEFFDPNSPTQR
VGGSVTKNFPTVQHAYRMYSLGNSYSEDDLLEWTQRVEKDLGEVTYFCELKYDGASISLT
YENGNLTHAVTRGDGIMGDEITTNVRTIRSIPLKINGECPPVFYMRGEIIMPLKAFNALN
DEREELGLEPFMNPRNTASGTLKLQDSSEVAKRGLEALMYNVAGENLPFDSQQNMLETAR
NWGFKVPNAGKKCNNIQEILEFVHYWDQKRHELPYETDGVVVKVNSMVQQDELGFTAKSP
RWAIAYKFKAEQAYTKLNSIDYQVGRTGAVTPVANLNPVLLAGTTVKRASLHNADIIEKL
DVRIGDTVIVEKGGEIIPKIVGVDLSQRPAGTEPTKFIAECPECGTPLKRNEGEAAYYCP
NEDGCAPQIKGRLVHFVSRRAMDIESIGAETIALLYQQNLVNNIADLYRLKKEDILPLER
MAEKSADNIIHALEESKKMPFAKVLYGIGIRYVGETVAKKLVKAFPSIDELMQASIEELE
AVDTIGTRIAESVKEYFAKPEHQQLIEDLKSFGLQMQAEQQEMLSQKLEGLSFLFTGKLT
AFTRDQAKEMVEKNGGKIVSSVSKNLNYLVVGEKAGSKLKKAQAIESIKIITENQFLDLI
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgaagaaaaaatccagcaactacgccaagaaatcaatcattataattaccaa
tattatgttttagatcaatcggaaatctctgattttgatttcgatatgaaactaaaggaa
ttgcaagatttagaggagcagtatcctgagttttttgatccaaactcgcctacgcaaaga
gtgggaggtagtgtaactaaaaatttcccgaccgtgcagcacgcttatcgcatgtattct
ttaggaaactcttattcagaagacgatttgctcgagtggacacagcgtgtggaaaaagat
ttaggcgaggttacatacttttgtgagcttaaatacgatggggcttcaattagtttaacc
tatgagaacggaaacctcacgcatgccgtaacgcgtggcgatggcatcatgggcgatgag
attacgaccaatgttcgcacaatccgtagcattccgttgaaaatcaatggagagtgccct
cctgtgttttatatgcgaggtgaaatcattatgcccttaaaagcttttaatgcgttgaac
gatgagcgagaagaattaggtttagaaccatttatgaatccgcgtaacactgccagcgga
acactcaaattgcaagattcaagcgaggtggctaagcgaggattagaggctttaatgtat
aatgtggcgggcgaaaatttaccatttgattcgcaacaaaacatgctcgaaactgctcga
aactggggatttaaagtgccaaatgcaggaaaaaaatgcaataacattcaagaaatttta
gaatttgtgcattattgggatcaaaaacgccatgaattgccttacgaaaccgatggagtc
gtggtaaaggtaaattctatggttcagcaagatgagcttgggtttacagccaaatcgcca
agatgggctattgcttacaaattcaaagccgaacaagcttatacaaaattaaattcaatt
gattatcaagtagggagaacgggagctgtaacgcctgtggcgaatctaaaccctgtgctt
ttggcgggaaccacggtgaaaagggcttctctgcacaatgccgatatcatcgagaaatta
gatgtaagaattggtgataccgtgattgtagaaaaaggcggagaaattatcccgaaaatt
gtgggcgtagatttgagtcaaagaccagcaggaacggagcctacgaagtttattgcagaa
tgtcccgagtgcggaacgccactcaaaagaaacgagggagaagcagcatattattgccca
aacgaggacggttgcgcgccgcaaatcaaagggagattagtgcattttgtgagtcgtcgt
gcgatggatatagaaagcattggagcagaaaccattgcacttttgtatcagcaaaatctt
gtgaataatattgcagatttataccgattgaagaaagaagacattttgccactggaacgc
atggcggagaagtcggcagacaatatcattcacgcattggaagagtccaaaaaaatgcct
tttgccaaggttttatacggaataggtattcgctatgtgggcgaaacggtggctaaaaaa
ttagtcaaagcttttccgagtatagatgaattaatgcaagcttcgatcgaagagctggag
gcggtagataccatcggaactcgcattgccgagagtgtaaaagaatattttgcaaagcca
gagcatcagcagttaatagaggatttaaagtcttttggactacaaatgcaggcagagcaa
caggaaatgctttctcaaaaattagaaggtttaagtttcttgtttacagggaaattaacg
gcttttacccgtgatcaagccaaagaaatggtggagaaaaacggagggaaaatcgtttct
tcggtgtctaaaaacttaaattatttggtagtgggcgaaaaagcaggttcaaaactgaaa
aaagctcaagccatagaaagcataaaaattattacagaaaatcaatttttagatttgatt
caatag
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integrated database retrieval system
