Oricola thermophila: HTY61_01395
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Entry
HTY61_01395 CDS
T06643
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
orm
Oricola thermophila
Pathway
orm03030
DNA replication
orm03410
Base excision repair
orm03420
Nucleotide excision repair
orm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HTY61_01395 (ligA)
03410 Base excision repair
HTY61_01395 (ligA)
03420 Nucleotide excision repair
HTY61_01395 (ligA)
03430 Mismatch repair
HTY61_01395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orm03032
]
HTY61_01395 (ligA)
03400 DNA repair and recombination proteins [BR:
orm03400
]
HTY61_01395 (ligA)
Enzymes [BR:
orm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HTY61_01395 (ligA)
DNA replication proteins [BR:
orm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HTY61_01395 (ligA)
DNA repair and recombination proteins [BR:
orm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HTY61_01395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HTY61_01395 (ligA)
MMR (mismatch excision repair)
DNA ligase
HTY61_01395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HTY61_01395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QKV17214
UniProt:
A0A6N1V8H3
LinkDB
All DBs
Position
308362..310482
Genome browser
AA seq
706 aa
AA seq
DB search
MAKNEPIPVDILSEEQAAAELKRLAAEIAEHDARYHREDAPIISDAQYDALKQRNLAIEQ
RFPHLKRPDSPSERVGAAVSEKFEKIRHSVPMLSLDNAFSDDDVRDFVARLRRFLKLAED
APLRLTAEPKIDGLSLSLRYEDGELVYAATRGDGATGENVTANARTIPDIPHRLKGNPPA
VLEVRGEVYMTKEDFAALNERREAAGKQTYVNPRNTAAGSLRQLDASVTAERPLKFFAYA
WGEVSDMPADTQMGMVDAFREYGFQTNPLMAVFDNVEKLIEHYHRIEMERGELAYDIDGV
VYKVDDLKLQERLGFVSRSPRWAIAHKFPAEKAMTTLNAIDIQVGRTGAITPVARLEPVT
VGGVVVENATLHNAEEIERLGVMIGDTVIVQRAGDVIPQILGFVEEKRPPDAKPFEFPTT
CPCELKTPVVRETNASGEESVVRRCSGEFACPFQRKEHLKHFVSRRAFDIEGLGDKQIEY
FFDDEGGLAIRTPADIFTLARRDESAMTKLKNREGYGEVSAQKLFDAIEERRTISLERLI
YALGIRHVGETTAKTLARAYGDWASFEAAALKIADGDVAAREEMDALEDIGDAVIDAIAR
YFSEPHNRDVVDALIAELTVEEAERPQTDTEFSGKTIVFTGSLERMSRDEAKAMAERLGA
KAAGSVSKKTDLVVAGPGAGSKLAKAQELGIEVIDEDEWFRRVEAL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaacgaaccgatacccgtagacattttgagcgaggaacaggctgctgccgag
ctcaagcggcttgctgccgagattgcggaacacgatgcgcgttatcatcgcgaggacgcg
ccgatcatttcggatgcccagtacgatgctctgaaacagcgaaatctggccattgagcag
cggttcccccacctcaagcgacccgattcgccgagtgagagggtcggcgccgcggtctcg
gaaaaattcgagaagattcgccacagcgtgccgatgctgtcgctcgataacgcgttctcg
gatgatgacgtgcgagatttcgttgcccggcttcgtcgtttcctgaaacttgccgaagat
gcgccgctccgactcacggcggaacccaagattgacggattgtcgctgtcccttcgctac
gaagacggcgaactcgtttacgcggcaacgcgcggcgacggagcgacgggcgagaacgtc
accgccaatgcgaggacgattcccgatattccgcacaggctgaaaggcaatccacccgcg
gtcttggaagtgcgcggcgaggtctacatgaccaaggaggatttcgcggcgctgaacgag
cggcgggaagcggcgggaaagcagacctatgtcaatccgcgcaacacggcggcagggtcg
ctgcgccagctcgacgcctcggtaacggccgaacgcccgctgaagtttttcgcctatgca
tggggcgaggtttccgacatgcctgcggatacgcagatgggcatggtcgatgccttccgg
gaatacggctttcagaccaatcccctgatggcggtgttcgacaatgtcgagaagctgatc
gagcactaccaccgcatcgagatggaacgcggcgaactcgcctacgatatcgacggcgtc
gtctacaaggtggacgacctgaagctgcaggaacggctgggcttcgtctctcgttcgccg
cgctgggcgatcgcgcacaagtttccggcggaaaaggcgatgacgacgctcaacgccatc
gacatccaggtcggccgcacgggcgcgatcacgccggtggcgcggctggagccggtcacg
gtcggaggcgtggtggtggagaacgcgacactgcacaatgccgaggagatcgagcggctc
ggcgtcatgatcggggacacggtgatcgtgcagcgtgccggtgacgtgattccgcagatc
ctcgggttcgtggaggagaagcggccgccggacgcgaagcctttcgaattccccaccacg
tgcccgtgcgaactgaagacgccggtcgtccgggaaaccaacgcaagcggcgaggaaagc
gtggtgcggcgctgctcgggcgaattcgcatgtccgttccagcgcaaggagcacctgaag
catttcgtgtcgcggcgcgccttcgacatcgaggggcttggggacaagcagatcgagtac
ttcttcgacgacgagggcgggttggcgatcaggacgcccgccgacatcttcacgctggcg
cggcgcgatgaaagcgccatgaccaagctgaagaaccgcgagggctatggcgaggtttcc
gcacagaagctgttcgatgccatagaggagcgtcgcaccatctcgctggagcgattgatc
tatgcactcggtattcgccatgtcggcgaaacgaccgcgaagacgctggcgcgggcctat
ggggactgggcgtcattcgaggcggcggcgctgaagattgccgatggtgacgtggccgcg
cgcgaggagatggatgcgctggaggacatcggagacgccgtgatcgatgccatagcgcgc
tatttctccgagccgcacaaccgcgatgtggtcgacgcgctgatcgcggaactgaccgtc
gaggaggctgagaggccgcagacggataccgaattttccggcaagaccatcgtcttcacc
ggttccctggaacgcatgtcacgcgacgaggccaaggcgatggcggagagactgggcgcg
aaggcggcaggctccgtgtcgaagaagaccgatcttgtggtggccgggccgggcgccggc
tcgaaacttgccaaggcgcaggaactcggcatcgaggtcatcgacgaggacgaatggttc
cggcgcgtcgaggcgctctga
DBGET
integrated database retrieval system
