Odobenus rosmarus divergens (Pacific walrus): 101368497
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Entry
101368497 CDS
T05148
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oro
Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oro00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
101368497 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oro03000
]
101368497 (KDM2B)
04121 Ubiquitin system [BR:
oro04121
]
101368497 (KDM2B)
03036 Chromosome and associated proteins [BR:
oro03036
]
101368497 (KDM2B)
Enzymes [BR:
oro01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
101368497 (KDM2B)
Transcription factors [BR:
oro03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
101368497 (KDM2B)
Ubiquitin system [BR:
oro04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
101368497 (KDM2B)
Chromosome and associated proteins [BR:
oro03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
101368497 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
101368497 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
101368497
NCBI-ProteinID:
XP_012416261
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPRKPSVDGFSSDSWLEMEEESCDQQPPEEKEEEEEEEEGADKVPKPPADGPPSPTSTP
SEDQEAPGKKPKAPALRFLQRTLSNESEESVKSTTVPADYPKTPTGSPATGVSAKWTHLT
EFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVV
TWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFC
KDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSI
CNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKE
QKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRKTDDVHLRRKRKYEKPQ
ELSGRKRASTLQTSPGSSSHLPPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRR
SWKNAEDRMALANKPLRRFKQEPEDDLPEAPPKARESDHSRSSSPTAGPSTEGAEGPEEK
KKVKIRRKRRLPTKELSKELSKELNQEIQKTENSLANENHQPIKSEPESESEEPKRPLGL
CERPHRFSKGLTGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISP
PPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHC
KSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSS
SCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASL
RLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFK
RCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgtccgattgaccgccagaggtacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctggag
gagaagctgcgcagtcagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgaatacgtgcagagagaagccctcagggttcccctgatatttcgagaaaag
gatggactggggattaagatgcctgaccctgattttacagtccgagatgtcaaactccta
gtgggtagccggcggctggtggatgtgatggatgtgaacacccagaagggcacggagatg
agcatgtcccagtttgtgcggtactacgagacgcccgaggcccagcgggacaagctgtac
aatgtcatcagtcttgagttcagccacaccaagctggagcacctggtcaagcgtccgact
gtggtagatctggtggattgggtggacaacatgtggccccagcatctgaaggagaagcag
acagaagccacgaatgccatcgccgagatgaaatacccgaaagtgaagaagtattgtctg
atgagcgtgaaaggctgtttcactgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggtgggaagatcttttggctgattcctccaaccctgcacaacttg
gcactgtacgaggagtgggtgctgtcaggcaaacagagtgacatcttcctgggagaccgc
gtggagcgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttccggt
tggatccatgcagtctacacccctgtagactctctggtatttggcggaaacatcctgcac
agctttaacgtgcccatgcagctgcgtatctacgagatcgaggacagaacacgggtgcag
cccaaatttcgctaccccttctactatgagatgtgctggtatgtcttggaaagatacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatccatgcttatt
gatgcccctagaaaacccagcgtagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgaccagcagcctccagaggagaaggaggaagaggaggaagaggaggaa
ggtgcagacaaggtgcccaagccacccgccgatggccctccatcgcccaccagcaccccc
tcagaggaccaggaggcccccgggaagaagcccaaagcacctgccctgcggttcctccaa
aggactttgtctaacgagtcggaggaaagtgtgaagtccacgacggtgcccgcagactac
cccaagacacccactggctcccctgccacgggggtctccgccaagtggacccacctcacc
gagtttgagctgaagggcctgaaagcgctggtggagaaactggaatccctcccagagaac
aagaagtgtgtccctgagggcatcgaggacccccaggcactcctggagggcgtgaagaat
gtcctgaaggagcatgcagatgacgaccccagtctggccatcactggggtcccggtagtc
acttggccaaagaagactccaaagaaccgggcagtaggtcggcccaaggggaagctgggc
ccggcctcggccgtgaagttggccgccaaccggacgacggcgggagctcgccggcgccgg
acgcgatgccgcaagtgcgaggcctgcctgcggaccgagtgcggagagtgtcacttctgc
aaggacatgaagaagtttgggggccccgggcggatgaagcagagctgcatcatgcggcag
tgcatcgcgcccgtgctgccccacaccgccgtgtgcctggtgtgtggcgaggcagggaag
gaagacacagtggaagaggaagagggaaagtttaacctcatgctcatggagtgctccatc
tgcaatgaaatcatccaccctggatgccttaagattaaggagtcagagggcgtggtcaac
gatgagcttccaaactgctgggagtgtccaaagtgtaaccacgccggcaagaccgggaaa
caaaagcgtggccctggctttaagtatgcctccaacctgcctggctccctgctcaaggag
cagaagatgaaccgggacaacaaggaagggcaggagcctgccaagcggaggagtgagtgt
gaggaggcacctaggcgcaggtcagacgaacaccccaagaaggtgcccccggacggcatc
ctgcgccgaaagacggacgacgtgcacctgagaaggaagcggaaatacgagaagccccaa
gagctgagtggacgcaagcgagcctcgacgctgcaaacgtcccccggttcctcctctcac
ctcccgccgaggccccctctaggcagcagcctcagcccctggtggagatccagtctcact
tacttccagcagcagctaaaacctggcaaagaagataagctttttaggaaaaagcggcgg
tcttggaagaacgccgaggaccggatggctcttgccaacaagcctctccggcgcttcaag
caggagccggaggatgacctgcccgaggcaccccccaaggcccgggaaagcgaccactcc
cgctccagctcccctaccgctgggcccagcacggagggggcagagggcccagaggagaag
aaaaaggtaaagatacgcaggaaaaggcggcttcccaccaaggagctgagcaaggagctg
agcaaggagctgaaccaagagatccagaagacggagaacagcctggccaacgagaaccac
cagcccatcaagtcagagcccgagagtgagagcgaggagcccaagcggcccctgggcctc
tgcgagcgcccccaccgcttcagcaaggggctcaccggcacccctcgggagctgcggcat
cagctggggcctggcctgcgcagcccaccccgtgtcatctcccggccccctccctccgtg
tccccgcccaagtgcatccagatggagcgacacgtgattcggccaccccccatcagcccc
ccgcctgactcactgcccctggatgacggggcggcccacgtgatgcacagggaggtgtgg
atggccgtcttcagctacctcagccaccaagacttgtgtgtctgcatgcgggtctgcagg
acctggaaccgctggtgctgcgataagcggttatggacccgcatcgatctgaaccactgc
aagtccatcacacccctgatgctgagtggcatcatccggcggcagcctgtctccctggac
ctcagctggaccaatatctccaagaaacagctgagctggctcatcaaccggttgcctggg
ctccgagacttggtgctgtcaggctgctcgtggatcgcggtctccgcactctgtagctcc
agctgtccgctgctccgaaccctggatgtccagtgggtagaaggactgaaggacgcccag
atgcgggatctcctgtccccacccacagacaacaggccaggtcagatggacaatcggagc
aagctccggaacattgtggagctgcgtctagcaggcctggacatcacggacgcctccctg
cggctcatcatacgccacatgcccctgctctccaagctccaccttagttactgtaaccat
gttactgaccagtccatcaacctgctcactgctgtgggcaccaccacccgagactcctta
accgaaatcaacctatcagactgcaataaggttactgaccagtgcctgtccttcttcaaa
cgctgtggaaatatctgtcatattgacctgaggtactgcaagcaggtgaccaaggaaggc
tgtgagcagttcatagctgaaatgtctgtgagtgtccagtttgggcaagtggaagaaaaa
ctcctgcagaaactgagttag
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integrated database retrieval system
