Occallatibacter riparius: MOP44_11085
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Entry
MOP44_11085 CDS
T08486
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
orp
Occallatibacter riparius
Pathway
orp03030
DNA replication
orp03410
Base excision repair
orp03420
Nucleotide excision repair
orp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MOP44_11085 (ligA)
03410 Base excision repair
MOP44_11085 (ligA)
03420 Nucleotide excision repair
MOP44_11085 (ligA)
03430 Mismatch repair
MOP44_11085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orp03032
]
MOP44_11085 (ligA)
03400 DNA repair and recombination proteins [BR:
orp03400
]
MOP44_11085 (ligA)
Enzymes [BR:
orp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MOP44_11085 (ligA)
DNA replication proteins [BR:
orp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MOP44_11085 (ligA)
DNA repair and recombination proteins [BR:
orp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MOP44_11085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MOP44_11085 (ligA)
MMR (mismatch excision repair)
DNA ligase
MOP44_11085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MOP44_11085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_3
PilB3_C
Motif
Other DBs
NCBI-ProteinID:
UWZ86466
UniProt:
A0A9J7BX68
LinkDB
All DBs
Position
2742960..2745011
Genome browser
AA seq
683 aa
AA seq
DB search
MDGKRQTSETAKRAEELREEIRHHEHLYYVLDAPVISDRDFDKLMNELKRIEAEHPELVT
ADSPTQRVGGKPAEGFRKVAHSRPMLSLDNAYSEEELRDWDRRVHELAGNLPVEYTCELK
MDGLSIALHYEGTPDGGARLARGLTRGDGQIGEDVTSNVRTIRSVPLSITPARMKKAGVP
ESFEVRGETVMPEKAFEQMNKEREAQGLTPAVNPRNAAAGTLRTIDPNIVAQRRLDVYAY
FLLSGGAYLEIGQEATLDALTALGFRVNPHRGKVHTVEQMMKFIADAEKKRATLGYDIDG
VVIKVDAQATQNRLGYTGKAPRWAIAYKFSAEQALTQLKGILITTGRTGKLTPTAQLAPV
FVGGVTIRQATLHNADWIERMGLMIGDWVKVERAGDVIPKVAAIVEDAEHPRGTEKFVYP
TKCPVCKQDVVREEGEADYRCVNVDCPAVLHGALEHWGSRGVMNIEGLGEVSAAQLLEKG
LVRSVADLYTLKLEDLMSLERWGEKSSRTLLEEIERSKGAGLARVLMGLGIRFVGERTAE
AIAQEFGSMDDIVSASAEELERVEEVGPRISHAIVDFFARPANRELVEHLKAVGVKMTAE
KKKRSSELAGMTIVLTGTLPNLSREEAKAMIEAAGGKVAGSVSKKTSYVVAGEEAGSKLD
KARELGVTVLDEAGLRKLIEERS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggatgggaagaggcagacgagcgagacggcgaagcgcgcagaggagttgcgcgaagag
attcggcatcatgagcacttgtattacgtattggatgcgccggtgatttccgaccgcgat
ttcgacaagctgatgaacgagctgaagcggattgaggcggagcatccggaactggtgacg
gccgactccccgacgcagcgcgtgggcggcaagccggcggaggggttcaggaaggtggcg
cactcgcgtcccatgctgagcctggacaacgcatacagcgaagaggagctgcgggactgg
gacaggcgggtgcatgagctggcggggaatctaccggtggagtacacgtgcgagctgaag
atggatgggctcagcatcgcgctgcactacgagggcacgccggatggcggggcgcggctg
gcacgagggttgacacgcggcgatgggcagatcggcgaagacgttacgtcgaatgtgcgg
acgattcgaagcgtgccattgagtattacgccggcgcggatgaagaaggccggagtgcct
gagagctttgaggttcgcggtgaaacggtgatgccggagaaggcgttcgagcagatgaat
aaagagcgcgaggcgcaggggctaacgccggcggtgaatccgcggaatgcagcggcgggc
acgctgcggacgattgatccgaacatcgtggcgcagcggcgtctggatgtgtatgcgtat
tttctgctgagcggaggcgcgtatctggagattgggcaggaggcaacgctggatgctttg
acggcgcttgggttccgcgtgaatccgcaccgagggaaggtgcacacggtcgagcagatg
atgaagttcatcgccgatgcggagaagaagcgcgccacgctggggtatgacatcgacggc
gtggtgatcaaggtggatgcgcaggcgacgcagaatcggctggggtacacggggaaggcg
ccgcggtgggcgatcgcctacaagttttcggctgagcaggcgctgacgcagttgaaggga
attttgatcacgacggggcgcacggggaagctgacgccgacggcgcaactggcaccggtg
ttcgtgggtggcgtaacgattcggcaggcgaccttgcacaacgccgactggattgagcgc
atggggttgatgatcggcgactgggtgaaggtggagcgcgcgggcgatgtgattcccaag
gtggcggcgattgtggaggacgcggagcatccgcgcgggaccgagaagtttgtgtatccg
acgaagtgcccggtgtgtaagcaggatgtggtgcgcgaagagggggaggccgactaccgg
tgtgtgaatgtggactgcccggccgtgctgcatggggcgctggagcactggggcagccgt
ggggtgatgaatattgaggggctgggcgaggtgagcgccgcgcagttgctggaaaagggg
ctggtgcgcagcgtggcggacttgtacacgctgaagctcgaggatttgatgagcctggag
cggtggggcgagaagtcgtcgcggacactgctggaggagattgagcgctcgaaaggcgca
gggctggcacgagtgctgatggggttggggatccggtttgtgggcgagaggacggcggag
gccattgcgcaggagttcgggtcaatggacgatattgtgagcgcaagcgcggaagagctg
gagcgggtggaagaggttgggccgcgtatctcgcatgcgattgtggacttctttgcgcgg
ccagcgaaccgggaactggtcgagcacctgaaggctgtcggcgtgaagatgaccgcagag
aagaagaagcggtcgtcagagctggcgggaatgacgattgttctgacgggcacgttgccg
aatctgagccgcgaagaggcgaaggcgatgatcgaggctgcgggtgggaaggtggccggc
tcggtgagcaagaagacgagctacgtggtggcgggggaagaggcgggatcgaagctggac
aaggcgcgggagctgggggtgacggtgctggatgaggcggggctgcggaagttgatagaa
gagcggagctaa
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