Ornithinimicrobium ciconiae: FNH13_15850
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Entry
FNH13_15850 CDS
T06094
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
orz
Ornithinimicrobium ciconiae
Pathway
orz03030
DNA replication
orz03410
Base excision repair
orz03420
Nucleotide excision repair
orz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
orz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNH13_15850 (ligA)
03410 Base excision repair
FNH13_15850 (ligA)
03420 Nucleotide excision repair
FNH13_15850 (ligA)
03430 Mismatch repair
FNH13_15850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orz03032
]
FNH13_15850 (ligA)
03400 DNA repair and recombination proteins [BR:
orz03400
]
FNH13_15850 (ligA)
Enzymes [BR:
orz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNH13_15850 (ligA)
DNA replication proteins [BR:
orz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNH13_15850 (ligA)
DNA repair and recombination proteins [BR:
orz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNH13_15850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNH13_15850 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNH13_15850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNH13_15850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QDO89622
UniProt:
A0A516GDM6
LinkDB
All DBs
Position
complement(3416458..3418587)
Genome browser
AA seq
709 aa
AA seq
DB search
MREDGPVTETASEDVRHEWTELAEEIRGHQFAYYVKDSPTISDGEFDALLKRLEAIEEQW
PELRVPDSPTQLVGGAFSTEFAAVDHVERMLSLDNAFSMEEVQAWAVRVENEAGGAQVHY
LCELKIDGLAVNLLYERGRLVRAATRGDGRTGEDVTLNVRTIDGIPHTLTPPEHQEGEAV
PIPDLLEVRGEVYFPVEAFEELNASLVEAGKTPFANPRNTAAGSLRQKDPRVTASRRLRM
LVHGIGARTGFEMTRQSQAYELLSAWGLPVSSHAKVVDDLAAVQEFIEHFGEHRHDAAEH
ELDGVVVKVDEVSVQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAV
MEPVKVAGSTVEQATLHNGYEVERKGVLIGDTVVLRKAGDVIPEVVGPVADLRDGSEVAF
VMPTQCPSCGTTLAEQKEGDKDIRCPNAQTCPAQLRERLFSLASRGAFDIEALGGEGVNA
LLDAGVISDESTLFRLTAEDIARVPLYTRAAKKTDPEEEVVDGRVLSANGLKLADNLQEA
KKQPLWRVLVALSIRHVGPTAARALSTEFGSVNAIREASLEQLAATEGVGPTIAQSVVDW
FEVDWHRQIVEDWEADGVRMADERDDSVERTLEGLTVVVTGSLEGFSRDESKEAIVSRGG
RAAGSVSKKTDYVVVGDNAGSKADKAEELGVPILDEAGFRRLLESGSPD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgaagatggtccggtgactgagacggcatcagaggacgtgcggcacgagtggacc
gagctggccgaggagattcggggacaccagttcgcctactacgtcaaggactcgccgacg
atcagcgacggggagttcgacgcgctgctgaagcggctggaggcgatcgaggagcagtgg
cccgagttgcgggtgccggactcaccgacccagttggtgggtggcgccttctccaccgag
ttcgccgccgtcgaccacgtcgagcgcatgctgagcctggacaacgcgttctccatggag
gaggtccaggcgtgggccgtccgggtggagaacgaggccggtggcgcgcaggtgcactac
ctgtgcgagctcaagatcgacgggttggccgtcaacctgctctatgagcggggacggctc
gtgcgggctgccacccgcggcgacggccgcaccggggaggacgtcaccctcaacgtccgc
accatcgacggcatcccacacaccctgacaccgccggagcaccaggagggcgaggccgtc
ccgatcccggacctgctcgaggtccgtggggaggtctacttcccggtcgaggccttcgag
gagctcaatgcctccctggtggaggccggcaagacgccttttgccaacccgcgcaacacc
gcggcgggctcgttgcggcagaaggacccacgggtcaccgcgtcgcgcaggttgcgcatg
ctggtgcacggcatcggcgcccgcaccggctttgagatgacccggcagtcgcaggcctat
gagctgctgtccgcgtgggggttgccggtgtcctcccacgcgaaggtcgtcgacgacctc
gcagcggtgcaggagttcatcgagcactttggcgagcaccgccacgacgcggccgagcac
gagctggacggggtggtcgtcaaggtcgatgaggtgagtgtccagcgacggctgggatcg
acctcccgggcgccccggtgggcgatcgcctacaagtacccgcccgaggaggtcaccacc
aagctgctcgacatccgggtcaacgtgggccgcacggggcgggtcacgccctacgccgtg
atggagccggtcaaggtcgccgggtccaccgtcgagcaggcgaccttgcacaacggctat
gaggtggagcgcaagggtgtgctgatcggtgacacggtggtgctgcgcaaggccggtgat
gtgatccccgaggtcgtagggccggtcgccgacctgcgcgacggctccgaggtcgccttc
gtgatgcccacgcagtgcccgtcctgcggcaccaccctggccgagcagaaggagggcgac
aaggacatccgctgccccaacgcccagacctgcccggcccagctgcgcgagcggctgttc
tcactggccagccggggggccttcgacatcgaggccctcggcggggagggcgtcaacgcg
ctgttggacgcgggggtgatcagcgatgagtcgaccctgttccggctcacggccgaggac
atcgcgcgggtcccgctctacacccgcgcggcgaagaagacggaccctgaggaggaggtc
gtcgacgggcgggtgctctcggccaacgggctcaagctcgccgacaacctgcaggaggcc
aagaagcaaccgctgtggcgggtcctggtggcactgtcgatccgccacgtcgggccgacc
gcagcgcgtgcgctgtccaccgagtttgggtccgtgaacgcgatccgcgaggcctcgctc
gagcagctggccgcgaccgagggcgtgggtccgacgattgcgcagtccgtggtggactgg
ttcgaggtcgactggcaccggcagatcgtggaggactgggaggccgatggggtgcggatg
gccgacgagcgggacgactccgtcgagcgcacgctcgaggggctgacggtcgtggtcacc
ggatcgctcgaggggttcagccgcgatgagtccaaggaagcgatcgtctcccgcggtggc
agggcagcagggtcggtgtccaagaagaccgactatgtggtcgtgggggacaacgccggt
tccaaggccgacaaggccgaggaactcggggtgccgatcctggacgaggccgggttccgc
aggctgttggagagcgggtcgcccgactga
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