Oryza sativa japonica (Japanese rice): 107275419
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Entry
107275419 CDS
T01015
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Module
osa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107275419
Enzymes [BR:
osa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107275419
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Pectate_lyase_4
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
107275419
NCBI-ProteinID:
XP_025883059
LinkDB
All DBs
Position
7:join(5904647..5904856,5904941..5905072,5905158..5905328,5905421..5905441,5905533..5906048,5906138..5906377)
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AA seq
429 aa
AA seq
DB search
MACNVLLFSAFVVVMSFFLCSVHAKVNMNASSLTNGDDSLRGKSSLESKKAVFDVRKHGS
YGDGQHDDTKALSKAWAAACSSLQPSIVLVPKGKRYLTKHITLSGPCKSSITFMIEGTLV
APPKRSDWSKETIRHWIMFNGVIGLTVAGGGTVDGNGKIWWQNSCKTNAKLACTESPTAL
TFYSCSNLKVENLKLLNSQQIHMSVEDCTNVRISGLTITAPGTSPNTDGIHITRSKNVQV
TGCTIKTGDDCMSIEDGTENLHVKNMVCGPGHGISIGSLGDHNSEAHVNNVTIGTVRLYG
TTNGARIKTWQGGRGYAKYIVFQNMIMENVWNPVIIDQNYCDSATPCKKQTSAVQISNVV
FKNIRGTSASKEAIKLDCSRNVPCQGITLNDVKLTVKGGGGDAKSTCRNAKWKKSGTVVP
QPCASTTTV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcaatgtgctccttttctctgcatttgtcgttgtcatgtccttcttcttgtgt
agtgttcatgccaaggtcaacatgaatgcatcctctttgactaatggagatgatagtctg
agaggaaagtcgtctctcgagtcgaagaaggctgtgttcgatgtgcgcaaacatggctct
tacggagatggacaacatgatgatacaaaggcattgtcaaaggcatgggctgcggcttgc
tcctctttgcaaccttctattgttcttgttccaaagggcaagagatacctcaccaagcac
attacactatctggcccatgcaaatccagcatcacgttcatgatagagggtactttggtg
gctcctccaaagaggtcagattggagcaaggaaactattaggcactggattatgttcaat
ggtgtaattggtcttactgtcgctggcggtgggacggtcgatggaaatggcaagatttgg
tggcaaaattcttgcaaaacgaatgcgaaacttgcatgcactgaatctccaacggccttg
acattctactcctgttcaaatctgaaagtggagaacttgaagctactaaacagccaacaa
atccacatgtcagtggaggattgcacaaatgttaggatctctggcctgacaatcacagca
ccaggcactagcccaaacaccgatggcatccatatcaccagaagtaaaaatgtacaagtg
acaggctgcacaatcaagaccggggacgattgcatgtcgatcgaggatggaactgagaac
ctccatgtcaagaacatggtgtgcggaccaggacacggcatcagcatcgggagcctaggc
gatcacaactctgaagctcatgtcaacaatgtcaccatcggcactgtcaggctatatggc
acaaccaacggagctcgcatcaagacatggcagggtggtcgggggtacgcgaagtacatt
gttttccagaacatgatcatggaaaatgtttggaaccccgtcattatcgatcaaaactac
tgtgactctgcaacaccatgcaagaaacagacatctgcagttcagattagcaatgtggtc
ttcaagaacatcaggggcacaagtgcttccaaggaggctatcaagctggactgcagcaga
aatgtaccttgccaaggcataaccttgaatgatgtcaagctcactgtcaagggaggtggt
ggtgatgcgaagagcacttgccgaaacgcaaaatggaagaaatcagggacagttgttcca
cagccttgtgcttccacaacaactgtatga
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