Oryza sativa japonica (Japanese rice): 107275638
Help
Entry
107275638 CDS
T01015
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.12
KO
K14487
auxin responsive GH3 gene family
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107275638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GH3
GH3_C
GH3_M
Motif
Other DBs
NCBI-GeneID:
107275638
NCBI-ProteinID:
XP_015618008
UniProt:
Q53P49
LinkDB
All DBs
Position
11:join(4456207..4456511,4456603..4456704,4456803..4458237)
Genome browser
AA seq
613 aa
AA seq
DB search
MLEKEGKLIMSREDEEIMAWFERTTRDAADVQRETLRRILAENAGVEYLRELGLAGLTDA
GSFRARVPVVTHADLDPYIQRVADGDASPVLTAKPVTAISLSSGTTQGKRKRLLFNDDLL
RSSIRFFHASYAFTNRAFPVEDGRVLQFMYGSRHETTKGGLTATTVMTNLLRSEEFTASM
AARSRPRLPSCSPSEVVFSPDFDESLYCHLLCGLLLAGEVRAVSASFAHSIVVALQALER
VWRELCADIRRGAASPARVTTPAVRRAVAPILAAPNPALADALERRCAALGDWSGVIPAL
WPNARYVQATMTGSMEHYVKKLRHYAGGVPLVSGNYASSEGVIGINAEQHAPPESVVFTV
LPDAAYFEFIPLKPPCTDAAADDDNPAAAGSSCYVDADDANPVGLTDVVVGEHYEVVMTT
FTGLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLAVDSAAKILAG
DGENHKQLEIADYTSHADTSSDPGHYVVFWELNGGGEEDGGGVLQRCCDEMDRAFGADAG
YAQSRKTCAIGALELRVLRRGAFQEVLRHYVAGGSSAGQFKMPRCVAPSNAGVLRVLKDN
TINIFFSTAYDYD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgttggagaaggagggcaagctgatcatgagccgcgaggatgaggagatcatggcctgg
ttcgagcggacgacgcgcgacgcggccgacgtgcagcgggagacgctgcggcgcatcctc
gccgagaacgccggcgtcgagtacctccgggagctcggcctcgccgggctcaccgacgcc
ggcagcttccgcgcccgcgtcccggtcgtcacccacgccgacctcgacccctacatccag
cgcgtcgccgacggcgacgcctcccccgtcctcaccgccaagcccgtcaccgccatctcc
ctaagctccggcacgacgcaggggaagcgcaagcgtctcctgttcaatgacgacctcctc
cgttcgtcgatacggttcttccatgccagctacgcgttcacgaacagggcgttcccggtg
gaggacggcagggtgttgcagttcatgtacggcagccggcatgagacgaccaagggcggg
ctcacggcgacgacggtgatgaccaacctgctccgcagcgaggagttcacggcgtccatg
gcggccaggtcgcggccgcggctgccgagctgcagcccaagcgaggtggtcttctcaccg
gacttcgacgagtcgctctactgccacctgctctgcggcctcctcctcgctggcgaggtc
agggccgtgtccgcctcgttcgcgcacagcatcgtcgtcgcgctccaggcgctcgagcgg
gtgtggcgggagctgtgcgcggacatccgccgcggcgccgcgtcgccggcgcgggtcacc
acgccggccgtccggcgagccgtggcgcccatcctcgccgccccgaaccccgcgctcgcc
gacgcgctggagcgccggtgcgccgccctgggcgactggtccggggtgatcccggcgctg
tggccgaacgccaggtacgtgcaggccaccatgacggggtccatggagcactacgtcaag
aagctgcggcactacgccggcggcgtgccgctggtctccggcaactatgcctcgtcagag
ggggtcatcggcatcaacgcggagcagcacgcgccgcccgagtccgtcgtgttcaccgtg
ctgcccgacgccgcctacttcgagttcatccccctcaagccgccctgcaccgacgccgcc
gccgacgacgacaacccggccgccgccggctcgtcgtgctacgtcgacgccgacgacgcc
aaccccgtcggcctgacggacgtcgtcgtcggcgagcactacgaggtcgtcatgaccacg
ttcaccggcctgtaccgctaccggctgggcgacgtggtgaaggtggccggattccaccac
gcgacgcccaagctcaggttcgtgtgccggcgaagcctcatcctgtccatcaacgtcgac
aagaacagcgagcacgacctccagctcgccgtcgacagcgccgccaagatcctcgccggc
gacggcgagaaccacaagcagctcgagatcgccgactacaccagccacgccgacacgtcg
tcggacccgggccactacgtcgtcttctgggagctgaacggtggcggtgaggaggacggc
ggcggcgtgctgcagcggtgctgcgacgagatggaccgggcgttcggcgccgacgcgggg
tacgcccagtcgaggaagacgtgcgccatcggggcgctcgagctgcgggtgctgcggcgc
ggggcgttccaggaggtgctccgccactacgtcgccggcggcagctcggcggggcagttc
aagatgccccggtgcgtcgcgccgtccaacgccggcgtgctccgggtccttaaggacaac
accatcaacattttcttcagcactgcctacgactacgattga
DBGET
integrated database retrieval system
