Oryza sativa japonica (Japanese rice): 107275720
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Entry
107275720 CDS
T01015
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107275720
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107275720
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107275720
NCBI-ProteinID:
XP_015649689
UniProt:
Q6Z9K9
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Position
8:join(11384955..11385730,11385838..11386216)
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AA seq
384 aa
AA seq
DB search
MANRNVPMLLPLAVLFLLGSGGVATAANVIDRCWRGQRNWAADRQRLAVCSVGFAGKMRQ
NRGAGVVAYTVTDPSDDPVRPRPGTLRYGATVLPAKVWITFARDMRIRLAQPLYVKNFTT
IDGRGADVHVAGGAGIVLYHARDVIVHGLHVHDCRAQPPGRVVVPGGAVQPSGSGDGDAI
RLVASSKVWIDHNTLSRCEDGLLDVTVGSTDVTVSNNWFHDHDKVMLLGHDDGFTTDRRM
RVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWRDYAIGGSMGPSVKSQGNLFAASGG
AGDNKKVTRRMPAVARGGGGGGKDQWHLHSVGDAFENGAFFRQVGNRVRPNYNRHQAFSA
ASAGDVRALTGGVGALTCSATAAC
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccgcaatgtaccaatgcttctgcccctcgccgtcctcttcctcctcggcagc
ggcggcgtcgccaccgccgcgaacgtgatcgaccggtgctggcgcggccagcgcaactgg
gccgccgaccggcagcgtctggccgtgtgctcggtgggcttcgccggcaagatgcggcag
aaccgcggcgccggcgtggtcgcctacacggtcaccgacccgagcgacgaccccgtccgg
ccgcggcccggcacgctccggtacggcgcgacggtgctgccggcgaaggtgtggatcacc
ttcgcgcgcgacatgcgcatcaggctggcccagccgctgtacgtcaagaacttcaccacc
atcgacggccgcggcgccgacgtgcacgtcgccggcggggccggcatcgtgctgtaccac
gcgagggacgtgatcgtccacggcctccacgtgcacgactgccgcgcgcagccgccggga
cgggtggtcgtcccgggtggcgccgtgcagccctccggcagcggcgacggcgacgccatc
cgcctggtggcgagctccaaggtgtggatcgaccacaacacgctgtcccgctgcgaggac
ggcctgctcgacgtcacggtcggctccaccgacgtcaccgtctccaacaactggttccac
gaccacgacaaggtgatgctcctcggccacgacgacggcttcaccaccgaccgccgcatg
cgcgtcaccgtcgccttcaaccgcttcggcccaaacgtcaaccagcgcatgccaaggata
aggcacgggtacgcgcacgtggtgaacaacctgtacgatgggtggagggactacgccatt
ggagggagcatggggccgagcgtgaagagccagggcaacctgttcgcggcgtcgggcggc
gccggcgacaacaagaaggtgacgaggaggatgccggccgtggcgcgcggcggcggcggc
ggcgggaaggatcagtggcacttgcactcggtcggcgacgccttcgagaacggcgcgttc
ttccggcaggtgggcaacagggtgcggcccaactacaatcggcaccaggccttctcggcg
gcgagcgccggcgacgtaagggcgctcaccggcggcgtcggcgctctcacgtgctctgcc
acggcggcgtgctga
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