Oryza sativa japonica (Japanese rice): 107276010
Help
Entry
107276010 CDS
T01015
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107276010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
107276010
04121 Ubiquitin system [BR:
osa04121
]
107276010
03036 Chromosome and associated proteins [BR:
osa03036
]
107276010
03400 DNA repair and recombination proteins [BR:
osa03400
]
107276010
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107276010
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107276010
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107276010
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107276010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
PTCB-BRCT
zf-HC5HC2H_2
zf-ANAPC11
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
107276010
NCBI-ProteinID:
XP_025881074
LinkDB
All DBs
Position
5:complement(join(24046388..24046756,24047072..24047196,24047380..24047545,24047725..24047860,24047970..24048056,24048167..24048259,24048386..24048492,24048600..24048786,24049497..24049603,24049692..24049826))
Genome browser
AA seq
503 aa
AA seq
DB search
MPGKHGNDGMSKDMGRATRLKRLQTPINLFEDECVFCHSFRTPPQFHGPMAHYQKGKLVS
SDNGSPCPTDIIYVHKKCLEWAPQVFYEGDTIVNLELEIKRAAKLKCKRCKLPGAALGCY
YTKCNRSYHVPCAMMTLNCRWDVDNGCVMCPEHATMPLPCDKISSPRNESGNSSSFPQSQ
SSIEQSDSADCEWEYPIIDQWNTSSSLSQGQSSAKEGISAVPKREIDQLNTSCSSFPEGQ
YLDKEGISTDEYRKEKQTDHLYTERDCPSDLWVLLGSALSESEKDSLQEFASWTDATVVN
EWTENVTHVIVGKSAGSAWSRSYEVLMALLFGKWVVTVGWIMDCLVKFIPSPEASFELRF
SHDSRASIGGNKKRRNQASEGAQKLFSGLNFCLSAYINPDDRQHIQSLIAAAGGQILETN
GGSHLLRENLEKVAVKPCYFVYDGGAPRDFTQGLLDDLPKEMEEGREYAACGAQVISHLR
VFDAIAAYDAQILSHKDHFTPDV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgcctggaaaacatggcaacgatggcatgtcaaaagacatgggacgtgctactagattg
aagagactgcaaacgccaatcaacttatttgaagatgaatgcgttttctgccattcattt
agaacacctcctcagtttcatggtccaatggcgcattatcaaaagggaaagcttgtgtcc
agtgacaatggcagtccatgcccaacagatatcatttatgttcataagaaatgcctggag
tgggccccgcaagtattttacgaaggtgataccattgtgaacttggagttggaaataaaa
cgtgccgcgaaattgaagtgcaaaagatgcaagcttcctggagcagctcttgggtgttat
tatacaaagtgcaataggagctatcatgttccatgtgcaatgatgactttgaattgccgc
tgggatgttgataacggttgtgttatgtgccctgaacatgcaacgatgccactaccatgt
gataagataagctcgccaagaaatgagagtggcaattcttcttccttccctcagagccaa
tcgtcaattgaacaaagcgattccgctgattgcgaatgggaatatcctataatagatcaa
tggaacacatcaagttctttgtctcaaggacaaagttcagccaaagaaggaatttctgct
gttcctaaaagggaaatagatcaacttaacacttcatgttcttcctttcctgagggccaa
tacttggacaaagaaggaatttccactgacgaatacaggaaagaaaagcaaacagatcac
ctttacacagaaagagattgcccctcggatctgtgggttttgcttggttcagctttaagt
gaatccgagaaggattccttgcaagagtttgcgtcttggacagatgcaactgtggtcaac
gagtggactgaaaatgtgacccatgttatcgttggaaaaagtgctggtagtgcatggagc
cgatcttatgaggtcctgatggctctactgtttgggaaatgggttgtcacggttggatgg
attatggattgcttggtaaagtttattccaagtccagaagcttcctttgagttaagattt
agccatgactcacgtgcatcaattggtggaaacaagaaaagaagaaatcaagcttctgaa
ggggcacagaagttgttctcgggactgaacttttgcctcagtgcctacataaaccctgac
gacagacaacacatacagagcctgattgcagctgctggagggcagatactggagacaaac
ggcggctcgcatttgctgcgtgaaaacctggagaaagttgctgtgaagccatgctacttc
gtctacgacgggggcgctccaagggatttcacccaaggattgcttgatgatctccctaag
gagatggaagagggcagagagtatgctgcctgtggagctcaggtgatcagccatttgagg
gtgtttgatgccattgcggcttatgatgcacagattctcagccacaaggatcacttcacc
ccggatgtgtaa
DBGET
integrated database retrieval system
