Oryza sativa japonica (Japanese rice): 107276148
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Entry
107276148 CDS
T01015
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Module
osa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107276148
Enzymes [BR:
osa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107276148
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
107276148
NCBI-ProteinID:
XP_015645891
LinkDB
All DBs
Position
7:complement(join(5877080..5877298,5877388..5877903,5878004..5878024,5878126..5878296,5878382..5878513,5878598..5878825))
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AA seq
428 aa
AA seq
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MLTVGKMACNVLIFSAYVVVMSFFLCSVHAKVNMNASFHLTSGDDSLRGRSLESKKVVFD
VRKHGAYGDGQHDDTKALAKAWAAACSSSQPSIVLIPKGKRYLTKHITLSGPCKSSITFM
IEGTLVAPPKRSDWSKETIRHWIMFNGVSGLTVAGGGTVDENGKIWWQNSCKTNAKLPCT
EAPTALTFYSCSNLKVENLKLLNSQQIHMSVEDCTDVRISSLTITAPGTSPNTDGIHITR
SKNVQVTGCIIKTGDDCMSIEDGTENLHVKNMVCGPGHGISIGSLGDHNSEAHVNNVTVD
TVRLYGTTNGARIKTWQGGWGYAKNIVFQNMIMENVWNPIIIDQNYCDSATPCKEQTSAV
QVSNVVFKNIRGTSASKEAIKLDCSRNVPCQGITLKDVKLTIKGGGSDAKSTCGNAKWKK
SGIALCFQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgttaacagttggaaagatggcttgcaatgtgctcattttctctgcatatgtcgtcgtc
atgtcgttcttcttgtgtagtgttcatgccaaggtcaacatgaatgcatcattccattta
actagtggagatgatagtctcagaggcaggtctcttgagtcaaagaaggtggtgttcgat
gtgcgcaaacatggcgcttacggagatggacaacatgatgacacgaaggcattggcaaag
gcatgggctgcagcttgctcctcttcgcaaccttccattgttctcatcccaaagggcaag
agatacctcaccaagcacattacactatctggtccatgcaaatcaagcatcacgttcatg
atagagggtacgttggtggctcctccaaagaggtcagattggagcaaggaaactattagg
cactggattatgttcaatggtgtgagtggccttactgtcgctggtggtgggactgtcgat
gaaaacggcaagatttggtggcaaaattcctgcaaaacgaatgcaaaacttccatgcact
gaagctccaacggccttgacattctactcctgttcaaatctgaaagtggagaacttgaag
ctactaaacagccaacaaatccacatgtcagttgaggattgcactgatgttaggatctct
agcctgacaatcacagcaccaggcactagcccaaacaccgacggcatccatatcacaaga
agtaaaaatgtacaagtgacaggctgcataatcaagaccggggatgactgcatgtcgatt
gaggatggaactgagaacttacatgtcaagaacatggtgtgtggaccgggacacggcatc
agcatcgggagcttaggcgatcacaactctgaagctcatgtcaacaatgtcaccgtcgac
accgtcaggctatatggcacaaccaacggagctcgcatcaagacatggcagggcggttgg
ggctacgcgaagaacatcgtgttccagaacatgatcatggaaaatgtttggaacccaatc
attatcgaccagaactactgtgattctgctacaccctgcaaggaacagacatctgcggtg
caagttagcaatgtggtcttcaagaacatcaggggcacaagtgcttccaaggaggctatc
aaactggactgtagcagaaatgtaccttgtcaaggaataaccttgaaggacgtcaagctc
actatcaagggaggtggtagtgatgccaagagcacttgcggaaacgcaaaatggaagaaa
tcagggatagccctgtgctttcagtaa
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