Oryza sativa japonica (Japanese rice): 107276250
Help
Entry
107276250 CDS
T01015
Name
(RefSeq) transcription factor SPEECHLESS
KO
K20558
transcription factor SPEECHLESS
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107276250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
107276250
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
107276250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Mesd
Motif
Other DBs
NCBI-GeneID:
107276250
NCBI-ProteinID:
XP_015624375
UniProt:
A0A0P0VH86
Q6ETQ5
LinkDB
All DBs
Position
2:complement(join(8905084..8905149,8906584..8907276,8907814..8908302))
Genome browser
AA seq
415 aa
AA seq
DB search
MADGGGGGLCELFSDDHRDIRHVADADLFRILETWEECINGGAGGGGGGVSLAGVADQGA
AAASTGAGGGARTTTTTTAANGRRREGRDEEKGGGGGGGPPAQKKQKGSSSSSSSPAALA
AAVGDGDGAAKMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDYIKEL
QQVLRSLEAKKNRKAYADQVLSPRPSPAAAALMVKPTPPISPRFAAAAAAGVPISPRTPT
PGSPYNKHAAAAATARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHELSPAPAFL
PILDSLVTELAARGGASCRPLVIPSSAAAIAGIVGVPDVRVEFAGPNLVLKTVSHRAPGQ
ALKIIAALESLSLEILHVSICTVDDATVLSFTIKIGIECELSAEELVQEIQQTFL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcggcggcggcggcctgtgcgagctcttctccgacgaccaccgcgacatc
cgccacgtcgcggacgccgacctgttccgcatcctcgagacgtgggaggagtgcatcaat
ggcggcgccggcggcggaggcggtggggtttctttagctggtgtggctgatcagggagcc
gctgcggccagcaccggcgccggcggtggtgcaaggacgacgacgacgacgaccgccgcg
aacggtcggcggcgggagggccgcgacgaggagaaaggcggcggcggtggcggtggtcct
ccggcacagaagaagcaaaaggggtcgtcgtcgtcgtcgtcgtctccggcggcgttggcg
gcggcggtgggggacggcgatggtgcggcgaagatgtcgcacatcacggtggagcgcaac
cggaggaagcagatgaacgagcacctcgccgtcctgcgctcgctcatgccatgcttctac
gtcaagaggggagatcaggcgtcaatcataggaggggtggtggattacatcaaggagctt
cagcaagtgcttcgctcgctggaggccaagaagaatcggaaggcctatgccgaccaggtg
ctcagcccgcggccgtcgccggcggcggcggcgctcatggtcaagcccacgccgccgatc
agcccgcggttcgccgccgccgccgccgccggggtgccgatcagcccacggacgcccacc
ccgggcagcccgtacaacaagcatgccgccgccgccgccaccgctcgcccgccgcacccg
gcggccgcgacgtcgtcgtgctcggtggcgtacagcatgtcgccggccatgacgcccacg
tcgtcctcgtcgacgacgacgacgacgacgcacgagctctcgccggcgccggcgttcctg
cccatcctcgacagcctcgtcaccgagctcgccgcccgcggcggcgccagctgcaggccg
ctggtcatcccctcctccgccgccgccatcgccggcatcgtcggcgtccccgacgtgagg
gtggagttcgccgggccgaacctggtgctgaagacggtgtcgcaccgcgcgccgggtcag
gcgctcaagatcatcgccgctctggagagcctctcgctcgagatcctgcacgtcagcatc
tgcaccgtcgacgacgccaccgtcctctccttcaccatcaagattgggatcgagtgcgag
ctgagtgcagaggagctggtgcaagaaattcagcaaactttcttgtga
DBGET
integrated database retrieval system
