Oryza sativa japonica (Japanese rice) (RefSeq): 107277317 Help Entry 107277317         CDS       T01015                                  Name (RefSeq) ubiquitin-60S ribosomal protein L40-like   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     107277317   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     107277317  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     107277317    04121 Ubiquitin system [BR:osa04121]     107277317 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     107277317   Archaea     107277317 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    107277317 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Ribosomal_L40e ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 Motif Other DBs NCBI-GeneID:  107277317 NCBI-ProteinID:  XP_015647252 LinkDB All DBs Position 7:18350939..18410530 Genome browser AA seq 135 aa AA seqDB search MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYGI QKESTLHLAVRLRGGSRGHYPCLAPGLLALARKYIEMKMICRKCYARLPPRSTNCRKKKC GHSNKLRRKKKLKDY NT seq 408 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaggacgctggacgagtgcatcacgctggaggtcgagggcagcgac accatcggcgacgtcaaggtcaagatccacgacaagaacggcatcccggcggacgaccag cggctgatgcacgccgggaggcagctggatgatcgacggacgctggccgactacggcatc cagaaggagtccacgctccacctcgccgtccgcctccgcggcggcagccgcggccactat ccctgcctcgctcccggcctcctcgccctcgcgcgcaagtacatcgagatgaagatgatc tgccgcaagtgctatgcacgccttccccccaggtctacaaactgccgcaagaagaagtgt ggtcacagcaacaagctaaggcgtaagaaaaagttaaaggactactga

Oryza sativa japonica (Japanese rice) (RefSeq): 4332169 Help Entry 4332169           CDS       T01015                                  Name (RefSeq) ubiquitin-60S ribosomal protein L40-2   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4332169   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4332169  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4332169    04121 Ubiquitin system [BR:osa04121]     4332169 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4332169   Archaea     4332169 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4332169 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 zf-C4pol Ubiquitin_5 Dsc3_N DUF2604 Motif Other DBs NCBI-GeneID:  4332169 NCBI-ProteinID:  XP_015629795 UniProt:  P0CH34 P0CH35 LinkDB All DBs Position 3:complement(7102156..7104769) Genome browser AA seq 129 aa AA seqDB search MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ LRPKKKIKN NT seq 390 nt NT seq  +upstreamnt  +downstreamnt atgcaaatcttcgtgaagaccctgactgggaagaccatcaccctcgaggtggagagcagc gacaccatcgacaatgtcaaggctaagatccaggacaaggagggaatcccgccggaccag cagcggctgatcttcgccgggaagcagctggaggacggacgcaccctggctgactacaac atccagaaggagtccaccctccacctcgtcctcaggctccgtggcggtatcatcgagccg tcgcttcaggcgcttgcccgcaagtacaaccaggacaagatgatctgccgcaaatgctat gcgcgcctgcaccctagggctgtcaactgccgcaagaagaagtgtggtcacagcaaccag ctgaggcccaagaagaagatcaagaactag

Oryza sativa japonica (Japanese rice) (RefSeq): 4332312 Help Entry 4332312           CDS       T01015                                  Name (RefSeq) ubiquitin   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4332312   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4332312  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4332312    04121 Ubiquitin system [BR:osa04121]     4332312 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4332312   Archaea     4332312 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4332312 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Ubiquitin_5 Dsc3_N Motif Other DBs NCBI-GeneID:  4332312 NCBI-ProteinID:  XP_015630915 UniProt:  A0A5S6R6S5 LinkDB All DBs Position 3:8409925..8412096 Genome browser AA seq 136 aa AA seqDB search MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNCRKKKCGHS NQLRPKKVRWCRYFNF NT seq 411 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaagacgctgacggggaagaccatcaccctcgaggtggagaacagc gacgccgtcgccaacgtcaaggccaagatccaggacaaggaaggtatcccgccggaccag cagcgcctcatcttcgccgggaagcagctggaggatggccgcacgctggccgactacaac atccagaaggagtccacgcttcacctggtgcttcgcctacgcggcggccacatctggatc gagccctcgctcagggtcctcgcctacaagcacaacatcaacaagatggtctgcaggaag tgctatgcaactctgcctcccagggctacaaactgccgcaagaagaagtgtggccacagc aatcagctgaggccaaagaaggtgaggtggtgcaggtacttcaacttctga

Oryza sativa japonica (Japanese rice) (RefSeq): 4343261 Help Entry 4343261           CDS       T01015                                  Name (RefSeq) ubiquitin   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4343261   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4343261  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4343261    04121 Ubiquitin system [BR:osa04121]     4343261 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4343261   Archaea     4343261 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4343261 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Ubiquitin_5 CFAP298 Dsc3_N DUF2604 Motif Other DBs NCBI-GeneID:  4343261 NCBI-ProteinID:  XP_015646154 UniProt:  A3BJV9 LinkDB All DBs Position 7:complement(18133357..18135395) Genome browser AA seq 139 aa AA seqDB search MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKK CGHTNELRPKKKLVSKLSV NT seq 420 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaagaccctgacggggaagaccatcaccctcgaggtcgagagcagc gacaccatcgacaatgtcaaggccaagatccaggacaaggaagggatcccgccggaccag cagcggctgatcttcgccgggaagcagctggaggacggccggacgctggccgactacaac atccagaaggagtcgacgctgcacctcgtgcttcgcctccgcggcggcggccgcccgggc tacccgatgatcgagcccaacctcctcgccctcgcccgcagcaagatggagaagaagatg atctgccgcaagtgctacgcgcgccttccctacaaggctaccaactgtcgcaagaagaaa tgcggccacaccaacgagctgaggccaaagaagaagctggtatccaagctttctgtttga

Oryza sativa japonica (Japanese rice) (RefSeq): 4347232 Help Entry 4347232           CDS       T01015                                  Name (RefSeq) ubiquitin   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4347232   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4347232  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4347232    04121 Ubiquitin system [BR:osa04121]     4347232 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4347232   Archaea     4347232 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4347232 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Ubiquitin_5 zf-C4pol Dsc3_N DUF2604 Motif Other DBs NCBI-GeneID:  4347232 NCBI-ProteinID:  XP_015612663 UniProt:  A0A0N7KQX0 LinkDB All DBs Position 9:16973676..16975664 Genome browser AA seq 140 aa AA seqDB search MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK KCGHSNEIRAKKRFMSKLSK NT seq 423 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaagacgctcaccgggaagacgatcacgctggaggtggagagcagc gacaccatcgacaacgtcaaggccaagatccaggacaaggaaggtatcccgccggaccag cagcgtctcatcttcgcggggaagcagctcgaggatggccgcaccctggccgactacaac attcagaaggagtcgacgcttcacctggtgctccgcctccgcggtggcagcaggggcggc taccccaaggggatcgagcccaacctccgcgagctcgcgcagaagtacaacgagaacaag ctggtttgccgcaggtgctatgcacgccttcccctcaggtccaccaactgccgcaagaag aagtgtggccacagcaatgagataagggcaaagaagaggtttatgtccaagctttcgaag tga

Oryza sativa japonica (Japanese rice) (RefSeq): 4347409 Help Entry 4347409           CDS       T01015                                  Name (RefSeq) ubiquitin   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4347409   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4347409  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4347409    04121 Ubiquitin system [BR:osa04121]     4347409 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4347409   Archaea     4347409 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4347409 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Ubiquitin_5 Rad60-SLD_2 Dsc3_N DUF2604 Motif Other DBs NCBI-GeneID:  4347409 NCBI-ProteinID:  XP_015611924 UniProt:  Q0J0U4 LinkDB All DBs Position 9 Genome browser AA seq 139 aa AA seqDB search MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGSRGGYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK CGHTNQIRPKKRFISKTAN NT seq 420 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaagacgctgacggggaagtcgatcacgctggaggtggagagcagc gacaccatcgacaacgtcaaggccaagatccaggacaaggaaggtatccctccggaccag cagcgcctcatcttcgcggggaagcagctggaggatggccgcaccctggccgactacaac atccagaaggagtcgacgctgcacctggtgctccgcctccgcggcggcagcaggggcggc tacaccatccaggagcccagcctcctgctcctggcgctcaagtacaacgagaagaagatg gtctgccgcaagtgctacgcacgccttcccgccaggtctaccaactgccgcaagaagaag tgtggccacaccaaccagataaggccaaagaagaggtttatatccaagactgccaactga

Oryza sativa japonica (Japanese rice) (RefSeq): 4347411 Help Entry 4347411           CDS       T01015                                  Name (RefSeq) ubiquitin-60S ribosomal protein L40   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4347411   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4347411  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4347411    04121 Ubiquitin system [BR:osa04121]     4347411 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4347411   Archaea     4347411 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4347411 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 DUF2604 TBK1_ULD Sde2_N_Ubi Ubiquitin_5 Rad60-SLD_2 Dsc3_N DZR_2 DHHC Motif Other DBs NCBI-GeneID:  4347411 NCBI-ProteinID:  XP_015611922 LinkDB All DBs Position 9:18664097..18671724 Genome browser AA seq 190 aa AA seqDB search MGYFAFVAAAFPRPYIRAGDHDCGAAHHSTTTTTTPPIGESAGRSFDGGKMQIFVKTLTG KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV LRLRGGSRGGYTIQEPTLRALALKYREKKKVCRKCYARLPIRSHHCRKKKCGHSKELRLK KKFINSLSIA NT seq 573 nt NT seq  +upstreamnt  +downstreamnt atgggatatttcgctttcgtggcggctgcgtttcctcgcccatatataagagcgggtgac cacgactgcggcgcggcgcaccactccaccaccaccaccaccactccaccgatcggcgag agcgcggggagatcgttcgacggcggcaagatgcagatcttcgtgaagacgctgacgggg aagacgatcacgctggaggtggagagcagcgacaccatcgacaacgtcaaggccaagatc caggacaaggaaggtatcccgccggaccagcagcgcctcatcttcgccgggaagcagctg gatgacggccgcaccctggccgactacaacatccagaaggagtcgacgctgcacctggtg ctccgcctccgcggcggcagcaggggcggctacaccatccaggagcccaccctccgggct cttgcgctcaagtacagagagaagaagaaggtctgccgcaagtgctatgcacgccttccc atcaggtctcaccactgccgcaagaagaagtgtggccacagcaaggagctgaggttgaag aagaagttcatcaactcgctttcgatagcgtga

Oryza sativa japonica (Japanese rice) (RefSeq): 4347896 Help Entry 4347896           CDS       T01015                                  Name (RefSeq) ubiquitin-60S ribosomal protein L40-2   KO K02927   ubiquitin-large subunit ribosomal protein L40e Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03010   Ribosome osa04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    03010 Ribosome     4347896   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     4347896  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03011 Ribosome [BR:osa03011]     4347896    04121 Ubiquitin system [BR:osa04121]     4347896 Ribosome [BR:osa03011]  Ribosomal proteins   Eukaryotes    Large subunit     4347896   Archaea     4347896 Ubiquitin system [BR:osa04121]  Ubiquitins and ubiquitin-like proteins   Ubiquitins    4347896 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 zf-C4pol Ubiquitin_5 Dsc3_N DUF2604 Motif Other DBs NCBI-GeneID:  4347896 NCBI-ProteinID:  XP_015651280 UniProt:  P0CH34 P0CH35 LinkDB All DBs Position 9:22692664..22694815 Genome browser AA seq 129 aa AA seqDB search MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ LRPKKKIKN NT seq 390 nt NT seq  +upstreamnt  +downstreamnt atgcagatcttcgtgaagaccctaacggggaagaccatcacgctcgaggtcgagagcagc gacaccatcgacaatgtcaaggccaagatccaggacaaggaaggcatccctccggaccag cagcgcctcatcttcgccggcaagcagctggaggatggccgcaccctggccgactacaac atccagaaggagtccacgctccacctcgtcctccgcctccgcggtggcatcatcgagccc tccctccaggccctcgcccgcaagtacaatcaggacaagatgatctgccgcaagtgctat gctcggctgcaccccagggctgtcaactgccgcaagaagaagtgcggccacagcaaccag ctgaggcccaagaagaagatcaagaactag

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