osa:4347409 : No such data.

KEGG   Oryza sativa japonica (Japanese rice): 107277317
Entry
107277317         CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    107277317
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107277317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    107277317
   04121 Ubiquitin system [BR:osa04121]
    107277317
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    107277317
  Archaea
    107277317
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   107277317
SSDB
Motif
Pfam: Ribosomal_L40e ubiquitin Rad60-SLD DUF2604 Ubiquitin_2
Other DBs
NCBI-GeneID: 107277317
NCBI-ProteinID: XP_066168789
LinkDB
Position
7:join(18580316..18580415,18580795..18580834,18634642..18634809,18635428..18635494,18635903..18635935)
AA seq 135 aa
MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGSRALDDRRTLVDYD
IQESTLHLAVRLRGGSRGHYPCLAPGLLALARKYIEMKMICRKCYARLPPRSTNCRKKKC
GHSNKLRRKKKLKDY
NT seq 408 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaggacgctggacgagtgcatcacgctggaggtcgagggcagcgac
accatcggcgacgtcaaggtcaagatccacgacaagaacggcatcccggcggacgaccag
cggctgatgcacgccgggagtcgggcactggatgatcgccggacactggtcgattacgac
atccaggagtccacgctccacctcgccgtccgcctccgcggcggcagccgcggccactat
ccctgcctcgctcccggcctcctcgccctcgcgcgcaagtacatcgagatgaagatgatc
tgccgcaagtgctatgcacgccttccccccaggtctacaaactgccgcaagaagaagtgt
ggtcacagcaacaagctaaggcgtaagaaaaagttaaaggactactga

KEGG   Oryza sativa japonica (Japanese rice): 4332169
Entry
4332169           CDS       T01015                                 
Symbol
OJ1175C11.2, OsJ_30399, UBQ1
Name
(RefSeq) ubiquitin-ribosomal protein eL40z fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4332169 (OJ1175C11.2)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4332169 (OJ1175C11.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4332169 (OJ1175C11.2)
   04121 Ubiquitin system [BR:osa04121]
    4332169 (OJ1175C11.2)
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4332169 (OJ1175C11.2)
  Archaea
    4332169 (OJ1175C11.2)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4332169 (OJ1175C11.2)
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 zf-C4pol TBK1_ULD DUF2604 Ubiquitin_5 Dsc3_N Plexin_RBD OTU1_UBXL
Other DBs
NCBI-GeneID: 4332169
NCBI-ProteinID: NP_001389050
LinkDB
Position
3:complement(join(7150796..7150825,7151101..7151167,7152676..7152865,7152957..7153059))
AA seq 129 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
LRPKKKIKN
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcaaatcttcgtgaagaccctgactgggaagaccatcaccctcgaggtggagagcagc
gacaccatcgacaatgtcaaggctaagatccaggacaaggagggaatcccgccggaccag
cagcggctgatcttcgccgggaagcagctggaggacggacgcaccctggctgactacaac
atccagaaggagtccaccctccacctcgtcctcaggctccgtggcggtatcatcgagccg
tcgcttcaggcgcttgcccgcaagtacaaccaggacaagatgatctgccgcaaatgctat
gcgcgcctgcaccctagggctgtcaactgccgcaagaagaagtgtggtcacagcaaccag
ctgaggcccaagaagaagatcaagaactag

KEGG   Oryza sativa japonica (Japanese rice): 4332312
Entry
4332312           CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40A fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4332312
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4332312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4332312
   04121 Ubiquitin system [BR:osa04121]
    4332312
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4332312
  Archaea
    4332312
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4332312
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 TBK1_ULD Ubiquitin_5 Dsc3_N DUF2604 OTU1_UBXL
Other DBs
NCBI-GeneID: 4332312
NCBI-ProteinID: XP_015630915
UniProt: A0A9K3Y723 A0A5S6R6S5
LinkDB
Position
3:join(8460150..8460252,8460429..8460624,8461385..8461451,8461847..8461891)
AA seq 136 aa
MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNCRKKKCGHS
NQLRPKKVRWCRYFNF
NT seq 411 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctgacggggaagaccatcaccctcgaggtggagaacagc
gacgccgtcgccaacgtcaaggccaagatccaggacaaggaaggtatcccgccggaccag
cagcgcctcatcttcgccgggaagcagctggaggatggccgcacgctggccgactacaac
atccagaaggagtccacgcttcacctggtgcttcgcctacgcggcggccacatctggatc
gagccctcgctcagggtcctcgcctacaagcacaacatcaacaagatggtctgcaggaag
tgctatgcaactctgcctcccagggctacaaactgccgcaagaagaagtgtggccacagc
aatcagctgaggccaaagaaggtgaggtggtgcaggtacttcaacttctga

KEGG   Oryza sativa japonica (Japanese rice): 4343261
Entry
4343261           CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4343261
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4343261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4343261
   04121 Ubiquitin system [BR:osa04121]
    4343261
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4343261
  Archaea
    4343261
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4343261
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 TBK1_ULD CFAP298 DUF2604 Ubiquitin_5 Plexin_RBD Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 4343261
NCBI-ProteinID: XP_015646154
UniProt: A3BJV9
LinkDB
Position
7:complement(join(18358674..18358715,18359697..18359763,18359887..18360094,18360292..18360394))
AA seq 139 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKK
CGHTNELRPKKKLVSKLSV
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctgacggggaagaccatcaccctcgaggtcgagagcagc
gacaccatcgacaatgtcaaggccaagatccaggacaaggaagggatcccgccggaccag
cagcggctgatcttcgccgggaagcagctggaggacggccggacgctggccgactacaac
atccagaaggagtcgacgctgcacctcgtgcttcgcctccgcggcggcggccgcccgggc
tacccgatgatcgagcccaacctcctcgccctcgcccgcagcaagatggagaagaagatg
atctgccgcaagtgctacgcgcgccttccctacaaggctaccaactgtcgcaagaagaaa
tgcggccacaccaacgagctgaggccaaagaagaagctggtatccaagctttctgtttga

KEGG   Oryza sativa japonica (Japanese rice): 4347232
Entry
4347232           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4347232
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4347232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4347232
   04121 Ubiquitin system [BR:osa04121]
    4347232
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4347232
  Archaea
    4347232
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4347232
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 zf-C4pol Rad60-SLD_2 TBK1_ULD DUF2604 Ubiquitin_5 Plexin_RBD Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 4347232
NCBI-ProteinID: XP_015612663
UniProt: A3BZG4 A0A0N7KQX0
LinkDB
Position
9:join(21354492..21354594,21355504..21355714,21355837..21355903,21356126..21356167)
AA seq 140 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK
KCGHSNEIRAKKRFMSKLSK
NT seq 423 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctcaccgggaagacgatcacgctggaggtggagagcagc
gacaccatcgacaacgtcaaggccaagatccaggacaaggaaggtatcccgccggaccag
cagcgtctcatcttcgcggggaagcagctcgaggatggccgcaccctggccgactacaac
attcagaaggagtcgacgcttcacctggtgctccgcctccgcggtggcagcaggggcggc
taccccaaggggatcgagcccaacctccgcgagctcgcgcagaagtacaacgagaacaag
ctggtttgccgcaggtgctatgcacgccttcccctcaggtccaccaactgccgcaagaag
aagtgtggccacagcaatgagataagggcaaagaagaggtttatgtccaagctttcgaag
tga

KEGG   Oryza sativa japonica (Japanese rice): 4347411
Entry
4347411           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4347411
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4347411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4347411
   04121 Ubiquitin system [BR:osa04121]
    4347411
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4347411
  Archaea
    4347411
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4347411
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 DUF2604 TBK1_ULD Plexin_RBD Rad60-SLD_2 DZR_2 Ubiquitin_5 Dsc3_N OTU1_UBXL HemeBinding_Shp DHHC
Other DBs
NCBI-GeneID: 4347411
NCBI-ProteinID: XP_025875918
LinkDB
Position
9:join(23064900..23065152,23066227..23066423,23066552..23066618,23067026..23067096)
AA seq 195 aa
MGYFAFVAAAFPRPYIRAGDHDCGAAHHSTTTTTTPPIGESAGRSFDGGKMQIFVKTLTG
KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV
LRLRGGSRGGYTIQEPTLRALALKYREKKKVLCTPSHQVSPLPQEEVWPQQGAEVEEEVH
QLAFDSVRHWKVFTS
NT seq 588 nt   +upstreamnt  +downstreamnt
atgggatatttcgctttcgtggcggctgcgtttcctcgcccatatataagagcgggtgac
cacgactgcggcgcggcgcaccactccaccaccaccaccaccactccaccgatcggcgag
agcgcggggagatcgttcgacggcggcaagatgcagatcttcgtgaagacgctgacgggg
aagacgatcacgctggaggtggagagcagcgacaccatcgacaacgtcaaggccaagatc
caggacaaggaaggtatcccgccggaccagcagcgcctcatcttcgccgggaagcagctg
gatgacggccgcaccctggccgactacaacatccagaaggagtcgacgctgcacctggtg
ctccgcctccgcggcggcagcaggggcggctacaccatccaggagcccaccctccgggct
cttgcgctcaagtacagagagaagaagaaggtgctatgcacgccttcccatcaggtctca
ccactgccgcaagaagaagtgtggccacagcaaggagctgaggttgaagaagaagttcat
caactcgctttcgatagcgtgaggcactggaaagtgttcaccagctga

KEGG   Oryza sativa japonica (Japanese rice): 4347896
Entry
4347896           CDS       T01015                                 
Symbol
UBQ2
Name
(RefSeq) ubiquitin-ribosomal protein eL40y fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4347896 (UBQ2)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4347896 (UBQ2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4347896 (UBQ2)
   04121 Ubiquitin system [BR:osa04121]
    4347896 (UBQ2)
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4347896 (UBQ2)
  Archaea
    4347896 (UBQ2)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4347896 (UBQ2)
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 zf-C4pol TBK1_ULD DUF2604 Ubiquitin_5 Dsc3_N Plexin_RBD OTU1_UBXL
Other DBs
NCBI-GeneID: 4347896
NCBI-ProteinID: NP_001409878
LinkDB
Position
9:join(27137998..27138100,27138200..27138389,27139367..27139433,27139797..27139826)
AA seq 129 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
LRPKKKIKN
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctaacggggaagaccatcacgctcgaggtcgagagcagc
gacaccatcgacaatgtcaaggccaagatccaggacaaggaaggcatccctccggaccag
cagcgcctcatcttcgccggcaagcagctggaggatggccgcaccctggccgactacaac
atccagaaggagtccacgctccacctcgtcctccgcctccgcggtggcatcatcgagccc
tccctccaggccctcgcccgcaagtacaatcaggacaagatgatctgccgcaagtgctat
gctcggctgcaccccagggctgtcaactgccgcaagaagaagtgcggccacagcaaccag
ctgaggcccaagaagaagatcaagaactag

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