Oryza sativa japonica (Japanese rice): 107280913
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Entry
107280913 CDS
T01015
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1
KO
K13103
tuftelin-interacting protein 11
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
107280913
Spliceosome [BR:
osa03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107280913
Other components
Complex C specific factors
107280913
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
107280913
NCBI-ProteinID:
XP_015638531
UniProt:
Q5ZAF8
Q5ZBV9
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All DBs
Position
1:complement(24161722..24163467)
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AA seq
581 aa
AA seq
DB search
MASVDDEGRNQGGGLPHGESTTSETPDLGTPHASSSNTETSGVQETTAVASKCVPTIHFV
RASSGDTDHHRLSLFSPPAYCTSYYPPLPPQPGSLATNQIVARLMAQMNYEEGAGLGKYG
HGIIDPIKPTIKYGKGGIGKFESPYDSDSNYDMGPPTEPELERGTGEAEPEAIVDAEEVR
AMDTLQREREAYAAARAWERHHEKVRAYNMRGQRPPKHDTAAADDWEGITSGYTAIKRAL
KVVRGQSESGKLTLGGLIHEFAGVKAKFPEEYRTNRMPYKAISFAAPLLHSQLSRQYNAS
EYGGTKPLLNRTLVMVEALKDMLGADTSAAYPRLIHDLVMAPPLDAWRWRAEEPKPMLRF
INRWKGLLPQATMDSILDEVILPELVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIV
YIIISRRLRDRLCGGISDYDYRLALPWKKVFDPMSWDEHIKRHVLPHMRKALHDLEISVR
MTWLQNNNFFPLVMRWASIVPVKYMVPLLIQGFFKKWMYANYRYLMGERPRLDEAMAWYE
VWKGLFTPELLAEKRVVMQLEAGLDMINRVMQGLEISVPKH
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgtcgacgacgaggggagaaaccaaggtggtggtcttccccatggcgagagt
actacaagcgaaacgccggatcttggcactcctcatgcatcctcctccaacaccgagact
agtggcgtgcaggaaactacggcggttgcaagcaaatgcgtgcccaccatccactttgtg
cgggcgagctccggcgacacggatcaccatcgtctatcgttgttttccccacccgcttac
tgcacttcctactatcccccgttgccgccgcagcccgggagcctggcgaccaaccagata
gtggcgaggttgatggctcaaatgaactacgaggaaggcgccggcctcggcaagtacggc
cacgggattatcgatcccatcaagccgaccataaagtatgggaaaggaggcattggaaaa
ttcgagtcaccgtacgacagcgactcgaattatgacatggggccgcctacagagcccgag
ctcgagcggggcaccggcgaagcagagccagaggccatcgtcgacgccgaggaggtccgt
gccatggacacgctacagagagaacgcgaagcctatgccgccgcgcgggcgtgggagcgg
caccacgagaaggttcgggcctataacatgcgtgggcaacgcccaccgaaacacgacacc
gccgccgccgacgactgggaggggataacctccgggtacacggcgatcaagcgcgccttg
aaggtggtccgggggcagagcgagtcggggaagctcacgttgggcggcctgatccacgag
ttcgcgggagtgaaggcgaagttcccggaggagtacaggacgaaccgtatgccatacaag
gcgatcagcttcgcagcgccgctgctccactcgcagctgagccgacagtacaatgcaagt
gagtacggaggcacgaagccgttgctgaaccgtacacttgtcatggtagaagcgctcaag
gacatgctaggagctgacacgtcggcagcgtaccctcgcctgatccacgatctcgtgatg
gcgccgcccttggatgcgtggaggtggagggctgaggagccgaagccgatgctacggttc
atcaatcgatggaagggcctccttccgcaagccaccatggattccatactggatgaggtc
atcttgccggagctggtagccgcggcggacgtgtttaggctgacaacgtggtcgagtaag
ccgagcgtttgcgtgggcatgtggattcctcatctcggccacgcccgcctacgaatagtg
tacatcattataagcaggcggctcagagatcgattgtgcggcgggatctctgactacgac
tacaggcttgcgttgccatggaaaaaggtgttcgatccaatgagctgggacgaacacatc
aagcggcatgtgctgcctcacatgaggaaggctctccatgatctcgagatctcggtaaga
atgacttggctacaaaacaacaacttcttccctcttgttatgaggtgggcatccatcgtg
ccagtaaagtacatggtgccacttttgatacaagggttcttcaagaaatggatgtacgcc
aactatcggtacctaatgggcgagaggcctcggctagatgaggcgatggcttggtatgaa
gtgtggaaagggcttttcacgccggaactgctcgcggagaagcgcgtggtcatgcaactc
gaggctggcctcgacatgatcaaccgcgtgatgcagggactggagataagcgtgccgaag
cattag
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