Oryza sativa japonica (Japanese rice): 107280948
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Entry
107280948 CDS
T01015
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osa03009
]
107280948
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
107280948
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_Vps41
VPS8_N
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
107280948
NCBI-ProteinID:
XP_025881205
LinkDB
All DBs
Position
5:complement(join(13589053..13589208,13589315..13589541,13589683..13589810,13590707..13590912,13591400..13591565,13596071..13596204,13597174..13597287,13598082..13598294))
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AA seq
447 aa
AA seq
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MGEKEAMLVVCANDVGLVYDINTCEKIMYIHDCVAPPCGLAFVDGFLLAASRTDKDQPIF
GSAIYFWAPSKIKEVQKSYVAEAIGPIACSKDGVYLVGGASSGHTYIWEIASGALLKRWC
GHKNAISCLAFSQDSSFLISGSIEGMVYTWSMVSLFQAEEPRPIEGTEIYPNFYNVKKNE
HKASITGILTMLRGQCPILITSSLDGNCKVTDLLSGLLLHTISLSSSVTTIAVDPLEQFL
LCGAGDTCIYVTVLNGIGTKKSSLTCFEDNCQILSGHNAPITALAFCSKGVRLVSASKDC
TILVWDTRAWQVINKIENKIGGHITNLLVFPKRAISTVHQERNFRPIKFPKLEKICKPTN
ETMAFLVPSQFSKDVNSSIVSFNSSNLLAEQLLDLEEKRTLEAVEMIIGVNIQDRVKNQT
MAKELTNMNMLLQGQVFDVMDVGADED
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgggggagaaagaggcaatgctagtggtgtgtgctaatgatgtagggttggtgtacgat
atcaacacatgcgagaagattatgtacatacacgactgcgttgctcctccatgtggcctc
gcttttgttgatggatttctcctcgctgcatctcggacagacaaggatcaaccaatcttt
ggaagtgctatatatttctgggctccaagtaagatcaaggaagtgcaaaaaagttatgta
gctgaagccattgggcccattgcttgctcaaaagatggggtgtatttggttggtggtgct
agttctggacatacttatatttgggagatagcaagtggagcattattgaaaagatggtgc
ggacataaaaatgctataagttgtttagccttctctcaagatagttcgtttctcatctct
ggatctatagaagggatggtttatacttggtcaatggtcagtttatttcaagcagaggaa
cctcgacccattgaaggtacagagatatatcccaacttttataatgtaaagaaaaatgag
cacaaggcgtcaataactggcattttaacaatgctaaggggtcaatgtcccattctaata
acgagctcactcgatggcaattgcaaggttacggatctattgtctgggttactacttcac
accatttcactctccagttcagttactacaatcgcagttgatcctttggaacaatttcta
ctttgtggggctggtgatacttgtatatatgtcactgtgttgaatggaattgggacaaaa
aaatccagtttaacatgttttgaggataattgtcaaattctttcaggacacaacgctcca
attactgcattagcattttgttctaaaggagtaaggttggtttctgcatcaaaggattgc
actatccttgtttgggacacaagagcatggcaagttattaataaaatagaaaacaaaata
ggtgggcatataacaaatttgctagtctttccaaagcgagcgatctcaactgttcatcaa
gaaagaaatttccgtcccatcaagttccctaaattagagaagatatgcaaaccaacaaat
gaaacaatggcatttttggtgccatctcaattctccaaagatgtcaattctagcatagta
tctttcaatagttccaaccttctggctgagcaactcttggatttagaggaaaagagaacc
cttgaagcagtagagatgattattggagtgaacattcaagaccgggtgaagaaccaaacc
atggcaaaggaattgactaatatgaatatgctactgcagggacaagtatttgatgtgatg
gatgttggtgcagatgaggattaa
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