Oryza sativa japonica (Japanese rice): 112936656
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Entry
112936656 CDS
T01015
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112936656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
112936656
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112936656
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112936656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112936656
NCBI-ProteinID:
XP_025876655
LinkDB
All DBs
Position
10:complement(1531616..1532443)
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AA seq
275 aa
AA seq
DB search
MHAAAAPAPPLWLRTMTAANLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTP
DEIYAALKSNVDEVPAVQIGITLSDAEGNLPTRSSSSPEQEIAWEVVFSDFDAGRDPHVV
DSVEFLKNQGIDFDLARQIGVTSTAFGEKLLAILPPPSRRGELTWSAFGGAYDMGYLLKM
LTGGQPLPETRQQFMQLVKSRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGVRQQEG
VKMLAGHKSVVAAAIFATIRSQGVHLLHGVIDGIL
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcatgccgccgcggcgccggcgccgccgctctggctccggaccatgacggcggcgaac
ctcgactcggagatgggactgatcggcgagatgatggtgcagtacccctacgtcaccatc
gacgtcgagttcgccggcgtcgtccaccacccgccttacaccggcagccgccccacgccg
gacgagatctacgccgccttgaagtcgaacgtcgacgaggtgcccgccgtccagatcggg
atcaccctctccgacgcggagggcaacctccccacgagatcttcgtcttctcctgagcag
gagatcgcgtgggaggtcgtcttctccgacttcgacgccggccgcgacccccacgtcgtc
gactccgtcgagttcctcaaaaaccaaggcatcgacttcgacctcgcgcggcagatcggc
gtcacctccacggcgttcggagagaagctgctcgccatcctgccgccgccgtcgcggcgt
ggcgagctcacctggtcggcgttcggcggcgcctacgacatgggttacctgctcaagatg
ctcaccggcggccagccgttgccggagacgagacaacagtttatgcaacttgtcaaatct
cggctaggcggcggccggatatttgattcaaaatatttggtagaacacgaccgtcaagat
ctgcgcaatgccgggttgaggcacacggcagatgttcttggcgtgagacagcaggagggg
gtgaagatgctggctgggcacaagagcgtggtagcagctgccatctttgccacaatccgg
tctcagggtgttcacctcctgcatggagttatcgatggaattttatag
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