Oryza sativa japonica (Japanese rice): 112936657
Help
Entry
112936657 CDS
T01015
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112936657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
112936657
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112936657
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112936657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112936657
NCBI-ProteinID:
XP_025876666
LinkDB
All DBs
Position
10:1773383..1774126
Genome browser
AA seq
247 aa
AA seq
DB search
MSLIRSLMPTFPFVAVDTQFPGVVHPHPRGAGVTADDRYAAVRANADELCLLQLGITLSA
ADGRLPVDGALVEFMWDFDFAGFDARYHRHAPESVQFLRAQGFDFEAARLAGVPALAFAA
ELAASGILGLRGVTWVAFGGMYDVAFLLRLATGGAPLPATRLGFLAQVGAVFGTQVFDAK
HMASLLHMHGGLAAVGGMLRLPPQLPRRHMAGQNSVMAIQLFMELRRRFNDLGGSLHSCS
LKIEGLT
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcatccggtcgctgatgccgaccttccccttcgtcgccgtcgacacccagttc
cccggcgtcgtccacccccacccgagaggggcgggggtcaccgccgacgatcggtacgcg
gcggtgagggcgaacgccgacgagctctgcctgctacagctcgggatcaccctctccgcc
gccgacggccgtctccccgtcgacggcgccctcgtcgagttcatgtgggatttcgacttt
gccggtttcgacgcccgctaccaccgccacgcgccggagtccgtacagttcttgagggcc
caggggttcgacttcgaggccgcgcggctcgccggcgtgcccgccctcgcgttcgctgcg
gagctcgccgcctccggcatcctcggcctccgtggcgtgacgtgggtcgccttcggcggc
atgtacgacgtcgcgttcctcctcaggctggccaccggcggcgcgccgctgccggcgacg
aggctgggcttcctggcgcaggtcggcgccgtcttcggcacccaggtgttcgacgccaag
cacatggcgtcgctgctccacatgcacggcggcctcgccgccgtcggagggatgctccgg
ctgccgccgcagctgcctcgccgccacatggccgggcagaacagcgtcatggcgatccag
ctcttcatggagctgaggagaaggttcaatgacctgggaggcagccttcacagctgctcg
ctcaagatcgaaggcctgacttga
DBGET
integrated database retrieval system
