Oryza sativa japonica (Japanese rice): 136351103
Help
Entry
136351103 CDS
T01015
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136351103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
136351103
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136351103
Spliceosome [BR:
osa03041
]
Complex C
Other components
Step II factors
136351103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
AAA_19
AAA_16
Cas3-like_C_2
nSTAND3
Flavi_DEAD
ABC_tran
TsaE
PhoH
Sigma54_activ_2
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
136351103
NCBI-ProteinID:
XP_066167675
LinkDB
All DBs
Position
6:complement(13908617..13911871)
Genome browser
AA seq
1084 aa
AA seq
DB search
MVAAKVSTPAGGAVRDGLRRLTQLSLVSKVCSELEAHLGVGDRVLAEFIVDLGRASPSVA
DFDAKLKAHGADLPDYLARTLHTVIHAIPTHADDAPAPAPQNPASRGTGARVCGKDKAEE
RVRDGDPGLYQVCRGKVTGLADAGCFVRLDDARGREGLVHVSEMPGRRIAVKRGQEVFVK
IVSVQGRNLGLSMRDVDQDTGKDLLPLQRARGEDDVPRPMANPWTDRAAATRRRTGVSGI
VIPEDNQTGTASSRRPIRRMSSPERWEMKQLIASGVLNAKDYPAFDDEDSEGMNYQEEGV
EEELEIELNEDEPAFLRGQGRSTIDVSPVRISTNPDGSLSRAAVLQSALIKEWRDIRNED
QRALVDSIPKDLNRPWEDPVPEVGGRYLAQELRGVGLSAESMPEWKKEAYGKTVTFGQTS
RLSILEQRQSLPIFRLKNELIEAVRDNQVLVVIGETGSGKTTQVTQYLAEAGYITRGKIA
CTQPRRVAAESVAKRVSEEFGCRLGEEVGYSIRFDDHTGPDTVIKYMTDGMLLREILLDT
DLSSYSVVMLDEAHERTIYTDILFALLKKLIRRRTDLKLIVTSATLDAEKFSGYFFDCNI
FTIPGRTYPVEILYSKQPESDYMHAALLTVSQIHLTEPEGDILLFLTGQEEIDHACQCLY
ERMKSLGRNVPELLIYAVYSAQPAEMQSKIFEPTPPGKRKVVVATNIAEASITIDGIYYV
IDPGFAKLNVYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPP
TTTPEIQRINLGETVLNMKAMGINDLLSFDFMDPPAPQSLITAMEQLYNLGALDEEGLLT
RVGRRMAEFPQEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADRKRGN
FFQPEGDHLTLLTVYQAWKAKQFSGPWCYENFVQLTSLRRAQDVRKQLLEIMDKYKLNVV
SAGNDLTKVRKAITAGFFFHAARKDPQGGYRTIADHQQVYIHPASALFQQQPEWVIYHEV
VMTTKEYMREVTAIDPRWLVELAPRFYRSADPTKISKRKRQERIEPLYDRYNEPNSWRLS
KRRG
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggccaaggtgtcgacccctgccggcggcgcggtgcgcgacgggctccggcgg
ctcacgcagctctcgctcgtctccaaggtctgctcggagctggaggcgcacctcggcgtc
ggcgaccgcgtcctcgcggagttcatcgtcgacctgggccgcgcatccccttccgtcgca
gacttcgacgccaagctcaaggcccacggcgctgacctgccggactacctcgcgcgcacc
ctccacaccgtcatccacgccatccctacccacgccgacgacgcccccgcccccgccccc
caaaaccctgcctcccgtggcaccggtgcaagggtttgcgggaaggacaaggcggaggag
cgggtgagagatggggatccggggctgtaccaggtgtgccgcgggaaggtcaccggcctg
gcggacgccgggtgcttcgtccgcctcgacgacgcgcgcggccgcgaggggctcgtccat
gtctccgagatgcccggccgccgaatcgccgtgaagcgtgggcaggaggtgttcgtcaag
atcgtgtccgtgcaggggcgcaatctggggctgtcgatgcgggacgtcgaccaggacacg
gggaaggacctcctaccgttgcagcgtgctaggggggaggatgatgtgccgaggccgatg
gcgaatccgtggaccgatcgagccgccgccactaggagaaggacgggggtgtcaggaatt
gtgatccccgaggacaaccagactggcacggcatcgtcgcggcggccgattaggcggatg
agctcgccggagaggtgggaaatgaagcagctgattgcttcaggggttctgaatgcgaag
gattacccggcgttcgatgatgaggatagcgaggggatgaattaccaggaggaaggtgtg
gaggaggagcttgagattgagcttaatgaagatgagccagcattcttgcggggacagggt
cggtccacaattgatgtgtccccagtgaggatttccacgaaccctgatgggtcgctgagt
cgagcggcggttctgcagagtgcgcttatcaaggagtggcgtgatatcaggaacgaggat
caaagagcattggttgactccatcccaaaggatctgaatcggccatgggaggatcctgtg
cctgaggtcggtgggcggtatctcgcacaagagctacgcggtgttggattatctgctgaa
agcatgccagagtggaagaaagaggcttatgggaagactgtaacatttggtcagacttca
aggctttcaatcctggaacagaggcagagtcttccaatattcaggctgaagaatgagctt
atcgaagctgttcgtgacaatcaagttctggttgttattggtgagaccggttcagggaaa
acaacccaggttacacagtaccttgctgaggcaggctatattacgagggggaaaattgca
tgtactcagcctcgcagggtcgctgcagagtcagttgccaagcgagtatcggaagagttt
ggttgccgattgggagaggaagttggttactcaatacgttttgatgatcacactggacca
gatactgtcattaagtacatgacggatggcatgctccttcgtgaaattttgttggacact
gacctctctagttactccgtggtcatgcttgatgaggcacatgagaggactatatataca
gacattctctttgccttactcaagaagctaattaggcgtagaactgatctcaagttaata
gtcacttccgccactcttgatgcagagaagttctctggatatttcttcgattgtaatatt
tttacaattcccggaagaacatatcctgtggagatactctattcaaaacagccagagagt
gattacatgcatgctgcgctgctcacagtatcacagatccatctgactgaacctgaaggt
gatatcctcttgttcttaactggccaggaagagattgatcatgcctgtcagtgtctctat
gagaggatgaagtctctaggtaggaatgtaccagaattgctgatatatgcagtgtacagt
gctcagccagctgaaatgcagtcaaagatctttgaacctactcctcctgggaagaggaaa
gtggtcgtggccactaacatagcggaagcatctattacaatagatgggatatattatgta
attgacccaggatttgcaaaactcaatgtgtataacccaaaacaagggctggattcactg
atcatcacaccgatatctcaagcatcagctaaacagagggcagggcgtgctggacgtaca
ggcccaggaaagtgttatcgtctatacactgaaagtgcctatcgcaacgaaatgcccccc
acaactactccagaaattcagaggatcaacttgggggagacggtcctcaatatgaaggca
atgggaataaacgatctactgtcatttgacttcatggaccccccagctcctcaatcactc
ataactgcaatggaacaactgtacaaccttggtgccttagatgaggagggtctccttaca
agagtagggagaaggatggcggagtttccacaagaaccaccactttcaaagatgctcctt
gctagtgtggacctcggatgcagtgatgaaatactgaccatcattgcgatgattcaaact
gggaacatattctaccggccaagggaaaaacaagctcaagccgatcggaaaaggggcaac
tttttccaaccagaaggggatcacctcaccctgctcaccgtgtatcaggcgtggaaggca
aagcagttttcaggtccatggtgctatgagaattttgtccagctaacatccctgaggaga
gcacaggatgtcagaaaacagctccttgagattatggacaagtataagcttaacgttgtc
tctgcagggaatgatctcaccaaggtgaggaaagccatcactgctggcttcttcttccac
gctgccaggaaggatccccagggaggatacaggaccattgctgatcatcagcaggtgtat
atccaccctgccagcgctctcttccagcagcaaccagagtgggttatctatcatgaagtc
gtcatgaccacaaaagagtacatgagggaggtgacagccattgacccaagatggcttgtt
gaactggcaccgaggttctacagatctgcagacccaacgaagatcagtaagcggaagcgc
caagaaaggattgagcctctgtatgacagatacaacgagccaaactcatggcgcctcagc
aagcgccgagggtaa
DBGET
integrated database retrieval system
