KEGG T01015: 4323885

Oryza sativa japonica (Japanese rice): 4323885

Entry

4323885           CDS       T01015

Name

(RefSeq) uncharacterized protein isoform X1

K06100

symplekin

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4323885
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4323885
   03019 Messenger RNA biogenesis [BR:osa03019]
    4323885
Transcription machinery [BR:osa03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     4323885
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     4323885
    U7-dependent histone pre-mRNA processing factors
     4323885

SSDB

Motif

Pfam:

Symplekin_C SYMPK_PTA1_N CRM1_C Retr_N

Other DBs

NCBI-GeneID:

4323885

NCBI-ProteinID:

XP_015619205

LinkDB

Position

1:complement(join(29272577..29272697,29273123..29273226,29273338..29273421,29274017..29274061,29274319..29274390,29274475..29274555,29274762..29274857,29275288..29275362,29276513..29276560,29276684..29276767,29276853..29276963,29277048..29277110,29277190..29277360,29278028..29278168,29278266..29278313,29278641..29278883,29278980..29279093,29279930..29279995,29280157..29280747,29280829..29281416,29281540..29281659,29282560..29282734,29283193..29283358,29283449..29283551,29284023..29284115,29285555..29285714,29286550..29286668))

AA seq 1293 aa
MEFEADGARWPEPRGDAAGAPPLERGDAPSPRFDSSRALRLLRELGSNVTEDLVVLMPNL
LSFLKHDDPVVVNQSIASGTNLFAAVLEEMTLQINKCGRVDAWLEEMWAWTKQFKDAVHN
LIHESVPVATKLFAVKFIETWILCFAPQSKSDRMQPTEGRNRRLFDSSRLSQFHPSLNPA
VLEADANRALILLVDILQSACAHQGSFLVGTINSLAAIAKNRPVYYERILPVLLGFDPSL
EVAKGAHPASLRYSLKTAFLGFLRSPCQAMIESKDTLVRQLRVLSPGEATEQIIRQVEKM
TRNIERASRASKDEPSTLDMPYGDVSRKYPAARSSDAFATADGVAKRARFDTSAALNPPF
QGASDYSNMQVDNEANVDHSSDPALLNCDMSPVEKMIEMIGALLAEGERGAESLGILIST
VEADVMADIVIETMKHLPETSILLATSNNGQQKKIQSSSSPLTENLPANSHSMPYSTQFA
LPADGVSMSMSDVPVVSGVHDSKRDPRRDPRRLDPRRTVAPAATSSIHVKGETTGVHQTN
NLSNVPYPVSGKVENSLDYSGDLSKNEDVQQTSCQPNQSLPKENSEILDDALELEPKFEV
QALADVGFHSSGVDKEMVNPLSPEATSNNELDSVELEVDPFSPVLKASTLEDTTNHDLPV
LPSHLELSDDEKILLHKLAIRRIIDDYKKNSVNTRFSLLAHLIAQSTADDNIMDLIQRHI
IYHYHDQGHELAMHVLYQLHSVSVADSPESTLPASKNYENFFISLARSLIHSLPASDKSF
SKFLCDAPYLPESMLKLLEDICVSQGNSQQTKDSDGDRVTQGLGTVWSLILARPPLRQDC
LDIALKCAIHSQDEVRGKAVRLVTKKLYELTYASERVEQFAIDSLLAIANKHGVETDINF
TSLKESSPEQFEAGSQETSVSGSHISDAEPSESTCNKTDLVSPKQSAVSVSEAKRHTSLF
FALCTKRPILLQHLFNVYGRSPKVVKQCIHWHIPNLVRNLGSSCSEMLAIIHNPPEGSEE
LVTLILQTLTEDSTPSAELVAAVKHLYKTKLKDASILIPLLSSFPKEEVLPIFPRLVDLP
PDRFQDALARILQGSAHTGPALTPAEVLIAIHDINPEKDRVALKKVTDACTACFEQRTVF
TQQVLEKSLNKLVDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWV
GFLKLAYQTQPRSFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVL
GFINEPHQAPIPFVPAAMQTADATSSLPGATLM

NT seq 3882 nt +upstreamnt +downstreamnt
atggagttcgaggcggacggcgcccggtggccggagccgcgaggcgacgctgccggggcg
ccgccgctggagcgtggcgatgcgccttcccctcgcttcgattcgtctcgtgccctaaga
ttgctgagagagcttggctcaaatgtaacagaagatttggttgtgctgatgccaaatttg
ctatcatttctgaaacatgatgatcctgtggttgttaatcaatccatagctagtgggaca
aatttatttgctgctgtattggaagagatgacacttcagattaataagtgtggaagggtt
gatgcttggcttgaagagatgtgggcttggacgaagcagtttaaagatgcagtccataat
ctgatccatgagtctgtcccagttgctactaaactgtttgctgtaaagttcattgaaaca
tggatcctgtgtttcgcacctcaatccaaaagtgaccggatgcagccaactgaaggaagg
aacaggaggttgtttgatagttcaagattatctcaattccatcccagccttaaccctgct
gttctcgaagctgatgcaaacagggctctcatcctccttgtggatatactgcagtcagct
tgtgctcatcaaggatccttcctagttggcaccattaattctcttgcagctattgcaaag
aatagacctgtttactacgaacgcatactgccagtgctacttggttttgaccctagtttg
gaggttgcaaaaggagctcatcctgcaagtctgcggtattccctgaaaacagctttttta
gggtttctaaggagtccttgccaggcaatgattgagtccaaggatactctggtaaggcag
cttcgtgttctgagccctggtgaagcaacagaacagattattaggcaagtagagaagatg
actagaaatattgagcgcgcttctcgtgctagcaaggatgaaccttcaacgttggatatg
ccttacggagatgttagtcggaaatatcctgctgccagatcaagtgatgcttttgctaca
gctgatggcgtagctaaaagagcaagatttgatacctctgctgctttaaacccaccattt
cagggagcatctgattattctaatatgcaggttgacaatgaagcgaatgtggatcattcc
tctgatccagctctcttgaattgtgatatgtctcctgttgagaagatgattgaaatgatt
ggtgctttacttgctgaaggggaaagaggagctgaatcccttggcattctcatctcaaca
gtagaagcagatgtcatggctgacattgtaatagaaacaatgaaacatctacctgaaact
tcaattctattagctaccagcaacaatggccagcaaaagaaaattcaatcttcctccagt
cccctgacagaaaacttgccagcaaactcccactcaatgccctacagtacgcagtttgca
cttcctgcagatggagtcagcatgtcaatgtcagatgtgcctgttgtgtctggcgttcat
gattctaagcgtgacccaagaagagatcctcgtcgccttgatcctcgtcggacagttgcc
cctgcagccactagttccatacatgtgaagggggaaaccaccggcgtgcatcagacaaat
aacttgtcaaatgtaccttatcctgtttcagggaaggttgaaaactctttagactattca
ggagacctatctaaaaatgaagacgtgcagcaaacatcttgtcaacccaatcaatcactc
ccaaaggaaaatagtgagattttggatgatgccttggaactggagccgaaatttgaagtg
caggcattagcagatgttggatttcattcttctggtgttgataaagagatggtcaatcca
ttgtctccagaagctacttcaaacaatgaattggatagcgtggaattggaggttgatcca
ttttccccagttttgaaggcatcaacgctggaggatactactaatcatgatttgccagtt
cttccatctcatctggaattaagtgacgatgagaaaatcttgttgcacaaattagcaatt
agacggataatcgatgattacaagaaaaacagcgttaacacaagattttccctccttgct
catttgattgcccagagtactgctgatgacaatattatggatttgattcagagacacatt
atataccattatcatgatcagggtcatgaactggcaatgcatgtgctgtatcagctgcac
agtgtgagtgttgctgattcaccagaaagcaccttacctgcttctaaaaattatgagaac
ttctttatatcacttgcaaggtccttgattcactcgctacctgcttcagacaaatctttt
agcaaatttctgtgtgatgcaccatacttgcctgagtctatgcttaaattactggaggat
atttgtgtgtcacaaggcaacagccagcaaacaaaggacagtgatggtgatcgtgtcacc
caaggccttggaaccgtgtggagtcttatcttagcacggcctccacttcgacaagattgc
ttagatattgctcttaagtgtgccattcactctcaagatgaagtcaggggaaaggcagtt
agattggttacaaaaaaactctatgaactaacatacgcatcagaaagagttgagcagttt
gccatcgacagtcttttggcaattgctaataaacatggtgtggagacggacattaatttc
acatccttgaaagaatcttcacctgagcagtttgaggcaggcagccaggaaacttcggtt
agtggctcccatatttcagatgctgaaccttctgaaagtacatgcaataagaccgatttg
gtttcacctaagcaatctgcagtatctgtatctgaggccaaacgccatacttcattgttc
tttgcactttgcacgaagaggcccattcttcttcaacatctgttcaatgtttatggaagg
tctccaaaagttgtcaagcagtgtatccattggcatatacccaatcttgtaagaaacctg
ggatcctcatgttctgagatgctggctattattcataacccacctgaaggcagtgaagag
cttgttaccttgatattgcaaactctgacagaagattcaactccttcagccgaacttgta
gcggcagttaaacatctatataaaaccaagctgaaggatgcatctattctcattccgttg
ttatcctcatttccaaaggaagaggtgctgcccatatttccaagactagttgatctccca
cctgatagattccaagatgcacttgctcggatattgcagggatctgctcatactggtccg
gctttaacccctgctgaagttcttatagccattcatgatattaatcctgaaaaggataga
gttgccctgaagaaggtcactgatgcttgcacagcttgctttgaacagcgcacggtattt
actcagcaagttttggagaagtcactgaataaattggttgacaatgtaccaattccactt
cttttcatgagaacagttattcaagcacttgatgctttcccagctttggttgattttgtc
atggaaatactctccaggcttgttaataagcagatatggaaaatgccaaagctgtgggtt
gggttcttaaaattggcatatcagactcagccacgctcgtttgatgttattttgcagtta
cctccaccccagcttgaaatagctttgaataagtaccccaatctacgaactcctctttgt
tcctttgttaatcagcggaacatgcacagcatcttgcccagacagattttgaaagttctg
ggcttcatcaatgaaccgcaccaggcaccaattccatttgtgcctgctgcaatgcaaacg
gcagatgcaacctcctctcttcctggtgcaactcttatgtga

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