Oryza sativa japonica (Japanese rice) (RefSeq): 4324027
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Entry
4324027 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4324027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4324027
03036 Chromosome and associated proteins [BR:
osa03036
]
4324027
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4324027
Coactivators
SAGA/TFTC/STAGA complex
4324027
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
4324027
STAGA complex
4324027
TFTC complex
4324027
SAGA complex
4324027
SLIK complex
4324027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
4324027
NCBI-ProteinID:
XP_015621355
UniProt:
A0A0N7KD18
Q8LRG9
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All DBs
Position
1:complement(17960865..17968598)
Genome browser
AA seq
541 aa
AA seq
DB search
MSIVPKETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADD
VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVDFKEIIEAPLPKAPLDTAV
VAHWLAIEGVQPAIPENPPVDAIVAPTENKRTEHGKDDGLPVDIKLPVKHVLSRELQMYF
DKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV
VQSLLHNPHIHIEPYLHQLMPSIITCMVAKRLGHRLSDNHWELRDFSANLVGSVCRRFGH
AYHNIQTRVTRTLVQGFLDPQKSLTQHYGAIQGISALGPSAIRLLLLPNLETYMQLLEPE
LQLDKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPNLLSPSTRPLLRSNKRVVTNNP
NKRKSSTDLSTSQPPLKKMTTDGAMNSMTSAPMPGTMDGFSTQLPNPSMTQTSSSGQLVE
STASGVIRRDQGSNHTQRVSTVLRLAWKEDQNAGHLLSSLYEVFGEAIFSFVQPPEISFF
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagtgcccaaagagacgattgaggtgatcgggcagagcgtcggcatcgccaac
ctccccgccgatgtctccgccgcgctcgcccccgacgtggagtaccgcctccgcgagatc
atgcaggaggccatcaagtgtatgcggcatgcaaagaggacagtcctgactgccgatgat
gttgatagtgctctcagcctcaggaatgttgagcctgtatatggatttgcttccggtgac
cccttgcggtttaagagagctgtgggacacaaggatctcttctatattgatgacagggag
gtagacttcaaagagattattgaggcccctctacctaaagctcctcttgatacagcagtt
gtagctcactggctagccattgagggagtccagcctgcaattccagagaatcctcctgta
gatgctatcgtagcaccaacagagaataaaaggacagagcatgggaaagatgatggactt
cctgttgacatcaagcttcctgttaagcatgtgttatctagagaactccagatgtatttt
gataaaatagcagagcttacaatgagtagatctgaaacctcagtttttagagaagcatta
gtgagcttatcaagagactcaggccttcatccgttggttccttacttttcctacttcatc
gccgatgaggttacccggagtttaggtgatcttcctgttttatttgctctcatgcgtgta
gtccaaagcctcctacacaatccccacattcatattgaaccatatttgcatcagttgatg
ccgtcaattatcacctgcatggttgcgaaaaggcttgggcataggctttcagacaaccat
tgggagcttagagacttctctgctaatttggttggttcagtatgtcgaaggtttggtcat
gcgtatcacaacatccaaacccgggtgacaaggacgttggtccagggatttcttgatcct
cagaaatcattgacacaacactatggtgcgattcaagggatatctgcattggggcccagt
gcaattaggcttctgcttttgcccaacctcgagacatacatgcagcttttagagccggaa
ttacaacttgataagcagaaaaatgagatgaaaagaaaggaagcatggcgtgtttatggt
gccctgctgtgtgctgcaggaaaatgcttatatgatcggctcaagttgtttcctaatttg
ctttctccatcaacacggcctcttttgaggagtaataagagagtcgtgactaacaaccca
aataaacggaagtctagtacagatctctccacatcccagccacctctgaagaagatgaca
acagatggtgcgatgaattctatgacttcagctcccatgccaggaaccatggatggcttc
tccacccaattacccaaccctagcatgacgcaaacttcatcctctgggcaattggtggaa
agcaccgcatcaggtgtgattcggagggatcagggaagcaaccacacgcaaagagtttcc
acagtgctgaggctagcctggaaggaggaccaaaatgctgggcatctgttgagttcattg
tacgaggtattcggtgaagccatcttctcctttgttcaaccaccagagatatcgttcttt
ttgtag
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