KEGG   Oryza sativa japonica (Japanese rice): 4324278
Entry
4324278           CDS       T01015                                 
Name
(RefSeq) tRNase Z TRZ3, mitochondrial isoform X2
  KO
K00784  ribonuclease Z [EC:3.1.26.11]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:osa03016]
    4324278
Enzymes [BR:osa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.11  tRNase Z
     4324278
Transfer RNA biogenesis [BR:osa03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    4324278
 Prokaryotic type
    4324278
SSDB
Motif
Pfam: Lactamase_B_4 Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B TVHS-like YadA_stalk
Other DBs
NCBI-GeneID: 4324278
NCBI-ProteinID: XP_015612581
LinkDB
Position
1:join(7336183..7336599,7337610..7337699,7337976..7338020,7338126..7338180,7338283..7338326,7338439..7338828,7339314..7339579,7340330..7340468,7340552..7340602,7341196..7341680,7341762..7342365,7342755..7343054,7346549..7347307,7348325..7348480,7348653..7349576,7349767..7349802)
AA seq 1586 aa
MPQLPSPLRRLLPLSQTLAAATPAPLLHLSRRLFSSSSSPSPSPSPRAACLRALAYRGGQ
AGGGGRRGHHNNLLRRGNSTLGKRSKEKMGGGGGGGGGGGEAEVAFNKTRAEGKDGRKGR
SMELKSRKLNPINTICYVQILGTGMDTQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKI
KLSKIDHIFLTRVCSETAGGLPGLVLTLAGIGEEGMSVNIWGPSDLDFLASAMRSFIPNR
AMLHTHSFGVEQNVSSSQSKDATVIVDDEVVRISAMFVKPRYNKEASCLNDSNLKPGNTA
IIYACELPELKGKFDPAKAAALGLKPGPKYRELQLGNSVQSDAFDKMVHPSDVLGPSIPG
PTVLLVDCPTKYHMHELFSLQSLIRFYEDSSEQAGSPKKVNCVIHLGPSSVTEALDYQNW
MRKFGATQHIMAGHEIKNMEIPILKGSARISSRLHFVCPHLFPSSGFWPVEPINDVDSEK
NKVSSLQACESVSAANLLKFHLRPYAQLGLDRSSIPSLTTYGDIVDELLSEIPEIKEVPE
QISKFWQSNSVGKHMLMVEEPWITENSSVCNFVDENSNSGKLQDGTPLRASGWRKHPKDT
PDIPCCVENATREDMEITFLGTGSSQPSKYRNVSSIYINLFTQGGILLDCGEGTLGQLKR
RFGVSGADDAVKSLKCIWISHIHADHHTGVARVLALRSKLLKGVPHKPLLVIGPRPLERF
LNAYSTLEDLDMQFLDCRQTLKPSIEAFLSDNATESATSQLGSTIFAPGSKMENYSRKPA
SPRDTTALTNLKDVLHESGLEVLYSVPVLHCPQAFGVVLRAKEKVSSAGKAIPGWKVVYS
GDTRPCPALVDASRDATVLIHEATFEDSMKDEAIARNHSTTKEAIAVGTSAGAYRIILTH
FSQRYPKIPVFDEVDMQKTCIAFDLMSVNLADLPVLPKVLPHLKLLFKDEMVVDESDEIQ
EAALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHYKGHPDPLKGDSLNKAVRETANDAIA
AIFSTEEPKPAVATEGLGKRIQGFGNTNFEPSRDDKKSFLSELSEVVGIGSASIKQGLSN
FAASHSSMITNDNGGPYKSPNLRRSLTTEMDKYGRYDPSEIQGESRSSSGASKNVSSGSW
GPSPSSSAPTDDTGSSQTGVKTREERLLDTIATSSGVRLQPTRDALQIFLTEAAKLDAVA
LSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIITSYFCENSASVVRCCELPHVS
LREKASKVLNLLVGEQPTGSNNFSETKTTVPAAQMPDLIDTGDQDDPGAQNSAQEGSERI
MGNSMFTSSVDDLLGGEPIADISTTTSNGNGGDPFADVSFHETADTKDTNDLFSGMTVEE
KATAALHDSSSINKNELSDIFGSSPEPFFQERVEDKGTVNDLMAGLNLNGTAQAQPGIKT
ESNNTVNVSQLFDMNSQTTNVANSAAMTGILGQSFYQQQQVPLQYNLPSQMLLNPAFAGQ
QLNYGAMSVLLAQQQQLLQNLGNFNAGLGHSSLNAMNSGNASVLPDIFNSSNQPQHVAVM
SNSKKDETKAFDFVSDHLAAARGSKK
NT seq 4761 nt   +upstreamnt  +downstreamnt
atgccgcaactgccctcccctctccgccgcctcctcccgctctcccaaaccctagccgcc
gccaccccggccccgctcctccacctctcccgccgcctcttctcctcctcctcctccccc
tccccctccccctcccctcgcgccgcgtgcctccgcgccctcgcctaccgcggcggccag
gcaggaggaggaggtcgccgcggccaccacaacaacctcctccgacgcgggaacagcacg
ctcgggaagaggagcaaggagaagatgggcggcggaggagggggagggggagggggaggg
gaggcggaggtggcgttcaacaagacgcgcgcggaggggaaggacgggaggaagggcagg
agcatggagctcaagagccgcaagctcaaccccatcaacaccatctgctacgtacagata
cttggtacaggaatggacacacaagatacttcaccttccattttactcttctttgacaaa
cagaggtttatatttaatgctggcgagggtcttcaacgtttctgtactgaacacaagata
aagttatcaaagattgaccacatatttttgactcgtgtatgctcagaaactgcagggggc
cttccaggactggttctgactctggcaggcataggagaagagggcatgtcggtgaatata
tggggcccttctgacctagattttttagctagtgcaatgagatcctttatcccaaataga
gcaatgcttcacacacatagctttggtgtggaacaaaatgtatcttcttcccaatctaaa
gatgctactgtcattgttgatgacgaagtagttcgaatatccgcaatgtttgtcaaacca
agatacaataaagaagccagttgcttgaatgactccaacttgaagcctggcaatactgct
atcatttatgcatgtgaactgccagaacttaaaggaaagtttgaccctgctaaggctgct
gcccttggtctcaagcctggaccaaaatatcgtgaacttcagctcgggaactctgtgcag
tctgatgcattcgataaaatggttcatccaagtgatgttcttggcccgtcgattcctgga
cctactgtacttttggtggattgccctacaaaatatcatatgcacgaactattttccctg
caatctcttatacgcttttatgaagattcttctgagcaagcagggagtcccaagaaagta
aattgtgtaatccacttgggcccatcttctgtgactgaagctctcgattatcagaactgg
atgagaaaatttggtgccacacagcatatcatggcagggcatgaaattaaaaacatggaa
attcctatcctgaagggtagtgcaaggatatcatcacgtcttcattttgtatgccctcat
ctcttcccatcctctggattttggcctgtggaacctataaatgatgttgattcagagaag
aataaggtttcttcattgcaagcctgtgaaagtgtgtcagcggctaatcttctaaagttt
catctgcgtccatatgctcaactggggctggacagatcgtctataccaagccttactact
tatggagatattgtagatgagctcttgtcggagatcccagagattaaagaagttcctgaa
cagattagcaagttctggcaaagtaattcagttggcaagcatatgctcatggttgaagag
ccatggattactgagaattcctctgtttgtaattttgtagacgaaaatagtaattcaggt
aagttacaagatggcactccattgagagcaagtggctggagaaagcacccaaaggacact
cctgatatcccttgctgtgtggagaatgcaacaagagaagatatggaaattacctttttg
ggtacgggttcatcccaaccttcaaaatatcggaacgtaagttccatatatattaacctg
tttacacaaggaggtatacttcttgattgcggtgaaggaaccttagggcaattgaaaaga
aggtttggtgtaagtggtgctgatgatgctgtgaaaagtttgaagtgtatttggatttcc
catattcatgctgatcaccacacaggtgtagctagagttcttgctttgaggtctaaattg
ttaaaaggggtacctcacaagcccttacttgttattggaccaagaccacttgaaagattt
ctaaatgcatattcaacactcgaagatcttgatatgcagttcctagactgcaggcagact
ttaaagcctagtatagaggcttttctcagtgacaatgctactgaatctgccacatctcaa
cttggaagcactatatttgctcctggaagtaaaatggagaactacagccggaagcctgca
agtccaagagatactacagctctaactaatttgaaagatgtcctacatgaatcaggtttg
gaagttctttacagtgtcccagttctgcactgtccacaggcgtttggagttgttctgaga
gccaaggagaaggtgagcagtgctggaaaagctattccaggatggaaggttgtttattca
ggtgacacgaggccctgcccagctcttgtagatgcgtccagagatgccactgtactaata
catgaggcaacatttgaggacagtatgaaggatgaggcgatcgctaggaaccatagtaca
acaaaggaggccatagcagtaggcacatcagccggagcataccgtataatcttgacccac
tttagccaaagataccctaaaatcccagtttttgatgaggttgatatgcaaaagacttgc
attgcgttcgacctgatgagtgtgaatctggcggacttgccagtactgccaaaggttctt
cctcacctgaagctcttgttcaaagatgagatggtggttgacgaatctgatgagatccag
gaggctgctttgcggttgattaaatatgctgttgggaagtctggtactgatttcaagcgg
gaaatgcaacggcactcagcagctatgcgccagcttgttcactacaagggacaccctgac
cccttgaaaggggattctcttaataaggctgtccgtgaaactgcaaatgatgccattgct
gctattttctccacagaggaacctaaacctgctgttgcaacagaaggtcttggcaagcgc
atacagggttttggaaatactaattttgagccatcaagagatgacaaaaaatctttcctt
agtgagctaagtgaagtagtgggcattggcagtgcttccattaaacagggtttgagcaac
tttgctgcttctcattcatcaatgataacaaatgataatggtggtccgtacaagagccca
aaccttcgtaggtctctgaccacagaaatggataaatatggcaggtatgatccaagtgaa
attcaaggcgagagccgttcttcatctggtgcttcaaagaatgttagttctggttcatgg
ggtcctagtccatccagttctgcaccaactgatgatactggttcaagtcaaacaggggtt
aagactcgtgaagagagacttttagatacaattgcaacttcaagtggtgtgcggttgcaa
ccaactcgagatgctctgcaaatatttctaacagaagctgccaaattggacgcagttgct
ttgagccgtgcccttgagaacaaattgaattctcctttatggcaggttcgcatgaaggca
atttgtgtattggaagcaattgtaaggaaacaggatactgatccttattcaatcattact
tcatatttctgtgagaacagtgcatctgttgttagatgctgtgagcttccgcacgtttct
ctcagagaaaaggcttcgaaggtcttaaatctgctggttggggaacaacctactggaagc
aataatttttcagaaacaaagacaacagtacctgctgcacagatgcctgatttgattgat
acaggggatcaagatgacccaggagctcaaaattcagctcaggaaggtagcgagaggata
atggggaatagcatgtttacttcttcggttgatgatttgctgggtggtgaacctattgct
gatataagtaccaccaccagtaatggtaatggaggtgatccgtttgcagacgtttcattc
catgagacagcagatactaaggatactaacgacctattctcggggatgacggtagaagaa
aaggcaacagcagccttgcatgatagctcatcaataaacaaaaatgaattgtcagatata
tttggcagcagccctgagccattcttccaagaaagagtagaggataaaggaaccgtgaat
gatttgatggctggtttgaaccttaatggaactgcccaagctcagcctgggattaaaaca
gaatctaacaatactgtcaatgtttcacagctctttgacatgaacagtcagacaacaaat
gtggctaattctgcagcaatgactggtattcttggccaaagcttttatcagcaacagcag
gttcccttgcagtacaacttgccatcacagatgctgttaaatccagcatttgctgggcag
caattaaactatggtgctatgagtgttcttcttgctcagcagcagcagctgctgcaaaat
ctaggaaatttcaatgctgggttgggacattcgtctttgaatgcaatgaacagcggaaat
gcatctgtgcttcctgatatcttcaattcaagtaaccaacctcaacatgttgctgtgatg
agcaactcaaagaaggatgaaactaaagcttttgattttgtttcggatcatcttgcagca
gctcgtggttcaaaaaagtaa

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