KEGG   Oryza sativa japonica (Japanese rice): 4324438
Entry
4324438           CDS       T01015                                 
Symbol
AGO4A, OsAGO4a
Name
(RefSeq) protein argonaute 4A isoform X1
  KO
K11593  eukaryotic translation initiation factor 2C
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4324438 (AGO4A)
   03036 Chromosome and associated proteins [BR:osa03036]
    4324438 (AGO4A)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4324438 (AGO4A)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    4324438 (AGO4A)
   RNA interference (RNAi) pathway
    RITS (RNA-induced transcriptional silencing) complex
     4324438 (AGO4A)
   microRNA pathway
    RISC loading complex
     4324438 (AGO4A)
SSDB
Motif
Pfam: Piwi ArgoN PAZ ArgoL1 ArgoL2 ArgoMid
Other DBs
NCBI-GeneID: 4324438
NCBI-ProteinID: XP_015621074
UniProt: Q9SDG8
LinkDB
Position
1:complement(join(9644574..9644749,9644842..9644873,9644962..9645056,9645637..9645710,9645800..9645911,9646035..9646098,9646278..9646343,9646464..9646594,9646952..9647089,9647183..9647295,9647374..9647539,9647656..9647769,9647859..9647921,9648021..9648128,9648211..9648327,9648411..9648573,9648714..9648811,9648920..9649017,9649122..9649258,9649377..9649598,9649693..9649898,9649991..9650212))
AA seq 904 aa
MESNSGEIEELPPPPPLPPNAEPIKTDDTKKLSKPKRALMARSGCGKKGQPIQLLTNHFK
VSLKAADEFFHHYYVNLKYEDDRPVDGKGIGRKVLDKLQQTYASELANKDFAYDGEKSLF
TIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSPGNDRKRVRRPYQTKTFKVELNFAA
KIPMSAIAQALRGQESENTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGG
VMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRAL
KNLRIKTSPANTEYKIVGLSERNCYEQMFTLKQRNGDGEPEGVEVSVYEYFVKNRGIELR
YSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLS
DVLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRL
IKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDVIEEDPSMRRAPAARRV
DGMIDKMQKKLPGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQCVAPTRVNDQYIT
NVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSR
EWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIF
RDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPG
TVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRS
TTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSS
MFFC
NT seq 2715 nt   +upstreamnt  +downstreamnt
atggagtccaacagtggtgaaatcgaggagttgccacctcccccacctttgccaccaaat
gctgagccaattaaaactgatgatacaaaaaagttatcaaaacctaagagggccttgatg
gctcgctctggttgtggcaaaaaagggcagccgatacagctgctgacgaaccacttcaag
gtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaagtatgag
gatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactccagcag
acctatgcgtctgagctggcaaataaagattttgcatacgatggtgagaagagcctgttc
accattggtgctcttcctcaagtgaacaatgagttcacggtagttctggaagacttcaac
actggaaagtcatctgcaaatggtggcagccctggcaatgacagtccaggaaatgacagg
aaaagggttagaaggccatatcagacaaaaacttttaaagttgagctgaactttgcagca
aaaattcctatgagcgccattgctcaggccttgagaggccaggaatctgaaaacacccaa
gaagcaattcgtgttattgatatcatattaagacagcattccgcaaaacagggttgcctt
ttggttcgccaatcctttttccataacaatccttcaaattttgttgacttgggtggtggt
gtgatgggctgtaggggattccattcaagcttccgagctacacagagtggactttcactc
aatatcgatgtgtccacaacgatgattgtgaaacctggtcctgtggtagattttctactt
gccaaccagaaggttgatcacccaaacaaaattgactgggcaaaggccaagcgtgctctg
aagaatttaaggataaaaacaagtccagcaaatactgaatacaagattgttggtttgagt
gagagaaactgctatgaacaaatgttcactttgaagcaaagaaatggtgatggtgaacct
gaaggtgtggaagtatctgtttacgagtactttgtgaagaatcggggcatagagttgaga
tactctggtgattttccctgtatcaatgtggggaaaccaaaacggccaacttattttcca
attgagctctgctctcttgtgcctttgcaaaggtataccaaggctttgagtacactacag
aggtcttcgcttgttgagaagtccaggcagaaacctgaagaaaggatgtcagttttgtct
gatgtgctgaaacgcagcaactatgattcagagcctatgttgaattcttgtggtatttca
attgctcgaggttttacacaagttgctggcagggtgctgcaggcccccaagctaaaagct
ggaaatggtgaagatctttttgcacgtaatgggcggtggaactttaataataagaggctc
attaaggctagcagtatcgagaaatgggcagttgttaacttctctgcacggtgtaatatt
agggatcttgtccgagacatcatcaagtgtggtggcatgaaaggaattaaagtagaagat
ccatttgatgtcattgaggaggacccttcaatgcgacgagctcctgctgcaagaagggta
gatggcatgattgacaagatgcaaaaaaagcttcctggacaaccaaagtttctgctctgt
gttcttgctgagaggaagaattcagatatttatgggccctggaagcggaaatgtcttgct
gaatttgggattattacacaatgtgtggcccctactagggtcaatgatcagtatattaca
aatgtactgttaaagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaa
acatccccttccattcctcttgtatccaaggtcccgacaataatattgggaatggatgtt
tcccatggatcacctggacagtctgatataccttcaattgctgcggtcgttagttctcgt
gaatggcctcttgtatcaaaatacagggcttcagtccgttctcagtcacctaagttagaa
atgattgatggactatttaagccacaaggagctcaggaagatgatggcctcattcgggag
ttattagttgacttctataccagtactggtaaacgtaagcctgatcaagtcattatcttc
agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatcaaata
attgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgca
cagaagaatcatcataccaaattttttgtgcctggatctcaaaataacgttcctcctggt
actgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcac
gctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggc
ttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagc
actacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtc
agccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacc
tcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctcc
atgttcttctgctga

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