Oryza sativa japonica (Japanese rice): 4324727
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Entry
4324727 CDS
T01015
Name
(RefSeq) protein SPA1-RELATED 4 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4324727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4324727
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
4324727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
Beta-prop_EIPR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Pkinase
PK_Tyr_Ser-Thr
WD40_RFWD3
Beta-prop_WDR75_1st
WDR54
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
WD40_like
Motif
Other DBs
NCBI-GeneID:
4324727
NCBI-ProteinID:
XP_015650301
LinkDB
All DBs
Position
1:join(30855513..30856112,30856214..30856371,30857216..30858158,30858237..30858383,30858512..30858823,30859464..30859523,30860049..30860237)
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AA seq
802 aa
AA seq
DB search
MEGSRVDAVAGGRRWGEGEEGGRRGGGGGGGGGGGGTGGGGGGGGRRGGEDGGEVSLREW
LDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFIESASGS
DVSGSCSGSDGSEEADPEPSPPRRRRDGASGGEDRGGKTFPLRSVLAMELTWYTSPEEAD
DRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKEASFCQL
LMHPVPETRPKMSDVLQSEFLNRSRNSLEEREAALRLREEIEEQELLLDFLLQLQRRKQD
IADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRKRFRPEL
PAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGN
PVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVK
AELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSN
RSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKL
VSGSDDGSVKLWNMNQAGSVGTIRTRANVCSVQFQPDSARSIAIGSADHKIYCYDLRNIR
APYCTLVGHTKTVSYVKYVDASTIVSASTDNSLKLWDLSMSQARIIDSPLRTFTGHTNTK
NFVGLSISDGYIATGSETNEVFVYHKAFPMPVLAYKFSVTDPISGQEIDDPSQFISCVCW
RGQSSTLLSANSSGNIKILEMD
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggagggctcccgtgtcgacgccgtcgcgggcgggcggcggtggggggaaggggaggag
ggtggacgacgcggaggaggaggaggaggaggaggaggaggaggaggaacaggaggtggt
ggtggtggtggagggaggagaggcggggaggacgggggtgaggtgagcctgcgggagtgg
ctggaccggccagggcgggcggtggaggcgccggagtgcctgcacgtgttccgccaggtg
gcggagtcggtggccatcgcgcacgcgcagggggtggccgtcggcagcgcgcgcccttcc
tgcttcgtcgtgtcgccgcccttcgcccgcgtcgcgttcatcgagtccgcctccggctcc
gacgtctcgggctcctgctccggctccgacggctcggaggaggccgacccggaaccctcg
cctcctcggcggcgacgggacggcgccagcggtggggaggaccgcggcgggaagacgttc
ccgctgaggagcgtgctggcgatggagctcacctggtacaccagccccgaggaggccgac
gaccgcggcggcgctactttcgcctccgacgtgtataggttaggagtgctcttgttcgag
ttgttctgtacgttcgagacgatggaggagaagatgcgagcaatggcgaacctacggcac
cgcgtcttgcctccacagctgctgctcaagtggcccaaggaagcatcattctgtcagttg
ttgatgcaccctgtgccggagacccgaccgaagatgagtgatgtgctacaaagtgagttc
cttaatcggtcaagaaatagtctggaggagcgtgaagcagcacttcggttacgcgaagag
atagaagaacaagaattactgctggattttcttctccaactacagagaagaaagcaagat
atagcagacaatttgcaggacacagttgcatttctctcttctgacatcaatgaagcgcac
cagcagtcagctctggggcagtgtggaaacttctcatttgagttggataaagaggtgtgc
tctgaaacagttgaagatcagagtgattgtggatccagaaaacgtttccgacctgagcta
ccagctgttgatatggaggaacagaatcgtagtcttgaagaatgttcgggaacagttcca
tcatctgtgctgatccaggaaagtgtgttgtctaaaagctccagactgatgaagaacttc
aaaaaacttgaaacagcatactttctcacaagatccaagttggcaaagcaagttgggaat
cctgtaagcagttgccatcaagtcgtgaaaaggactactgggtcacctgttgtgactgag
ggaagttcaatagatgattttgctttggaagggcattatggtacaaggcaaagaggttgg
atgaactcttttcttgagggattgtgtagttacttatcgttcagtaagttgaaagttaag
gcagaactgaagcaatgtgatctgctgaactcatcaaacttagtatgctctgtaggcttc
gaccgggataaagagttctttgcaactgctggtgtaaataagaagataaaagtgtttgaa
tataatatgattgtaaatgaacattgtgatattcactatcctgtggttgagatgtctaat
agatcaaaattaagttgtatttgctggaacagctacatgaagagccatatagcatctagc
gactttgaaggtattgtacaggtttgggatgttactaggagccaagtttttgttgaaatg
agggaacatgagaggcgtgtgtggtcggtggacttctcacttgcggacccaacaaaattg
gttagcgggagtgatgatggttcagtgaagctgtggaatatgaatcaggctgggagtgtt
ggcactatcagaacaagagcaaatgtatgctctgtgcagtttcaacctgattctgctcgt
tccattgcaattggatcagcagatcacaaaatttactgctatgatcttcgaaacatacga
gctccttattgtacgttagttggccacacaaaaacagttagctatgttaagtatgtggat
gcatcaactatagtgtccgcatctactgacaactccttgaagctctgggacttgtccatg
agtcaggcaaggataattgacagtccgcttcggacatttacaggtcatacaaacactaag
aattttgttggactttctatatctgatggttacattgctactggctcagagacaaatgag
gtttttgtctaccacaaagcatttccaatgccagtcttggcatataaattcagtgtcaca
gacccaatatcaggccaggagattgacgatccatcacagttcatttcatgcgtgtgttgg
agagggcagtcctcaacgcttctttctgctaattccagcgggaacattaaaatcttagaa
atggactga
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integrated database retrieval system
