Oryza sativa japonica (Japanese rice): 4324750
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Entry
4324750 CDS
T01015
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4324750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4324750
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4324750
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
Flagellar_rod
SGT1
COG3_N
APG6_N
Motif
Other DBs
NCBI-GeneID:
4324750
NCBI-ProteinID:
XP_015613820
LinkDB
All DBs
Position
1:complement(join(37633342..37633434,37633955..37634053,37634124..37634211,37635073..37635176,37636826..37636903,37637958..37638080,37638219..37638300,37638402..37638489,37638853..37640359))
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AA seq
753 aa
AA seq
DB search
MATSFSFGSSAASGSTGSSPFSFSTGTAPSAFSFSQPAAAAAAAAASSPAPASAPAFGSS
LFSSSSSAAAPTFGSSLFGSAPAASAAAPATSSSPSPFGFGSTGFSFGQSTAAAASAPSI
FGASSTPATATTPSVFGAASSAASTPNIFGGATSSPATTPSLFGGASSAATAPSPFGATS
AAAAAPGLFGAAASAASAPSLFSGAATGFGFGSAASGTTTAATAAASTPSFGFGLNTGAA
ASSTTTTSASSPALGFGAGTGSALFGSTTSAPLFSTTTASSPATTATTTASFGFSSSPAT
AASAPSFGFTPSSATTTTASTAPALFSSASSAPAFSFTKSSSAAPTTPASAPSTGFSLAT
SPAAPAPSLFSNTSAAASSSATSLSFPFGSSSASAPAFASASATSASTPSAATASPATSG
SLFSVPAPASSAGGFSFTVVPSSSSAAATTATTTTVTSASTSAAMTTPAPSATTTATLFS
QQRTTPASASAPSTQTQSILSFGVSTVAASTSTTITSTSQATSSAVQASSTGPTTTAITP
VASQAPKLPSEIVGKNVEQIIRDWNNELQDRTAKFRKHATAISEWDRRILQNRTVLIRLE
AEVAKVVETQTSLERQLELIETHQKEVDKALQSMEEEAERVFQDERLLLREDEAASARDT
MFEQSETVENELQHMTEQVKSIIQTLNATQGAEFETADSMTPFDVAVRILDNQLRSLMWI
DEKANEFSSRIQRLPNNSAAAERDSGMPRFWLS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttctctttcggctcttccgccgcgtcgggatccaccggctcctcccca
ttctccttctccaccggcaccgccccatcagccttctccttctctcagcccgccgccgcc
gccgccgccgccgccgcctcctcccctgcccccgcctccgccccagccttcggctcctcc
ctcttctcctcctcctcctccgccgccgctcccacttttggctcctccctattcgggtcc
gcccccgccgcctccgccgccgcccctgccacctcctcatccccatctccgtttggcttc
ggatccaccggcttctcgttcggccaatccaccgccgccgccgcgtccgccccatccatc
ttcggcgcgtcctccacccccgccaccgcgaccacccctagcgtattcggcgccgcatca
tccgcggcatccacccccaacatcttcggcggcgccacctcctccccggcgaccaccccg
agcttattcggcggtgcttcctccgcggctaccgcacccagtcctttcggcgccacctcc
gccgccgccgccgcacccggtctgttcggggccgccgcgtccgctgcttccgcgccaagc
cttttctctggcgccgccacgggctttggctttggctcagctgcgtcgggcaccaccact
gccgcgaccgctgctgcctcgacaccgtctttcggcttcgggttgaacaccggggccgct
gcatcgagtaccaccactacttcggcttcctctccggctctagggtttggagcaggcacc
ggctcggcgctgtttggatccactacctctgcaccactcttcagcaccaccaccgcctcg
tccccagcgaccacggccacgaccacggcgtcctttggcttctcatcgtcgccagcgacc
gccgcctctgctccgtcgttcggcttcacaccgtcatcggcaaccaccacgaccgcgagc
accgcccctgccttgttctcttctgcatcttccgctcccgccttctccttcacgaagagt
agctctgctgctcccaccacgccagcgtctgctccatctactggcttctccttggccact
tcgccggcagcacctgctccctcattgttctctaacaccagtgcagcagcaagctcgtct
gccacttctctcagctttccgtttggctcatcttctgcttctgcaccggcatttgcttct
gcttctgcaacgagcgcatccacaccgtcagcagctactgcttcccccgcgacatcaggg
tcattgttctcagtgccagcacctgcttcttctgctggtggtttcagtttcacagtagta
ccatcgtcatcatcagctgcggctactacagctactaccacaacagtcacaagtgcatcg
acatctgcagccatgacaacgccggctccttcagcaacaacaactgctacactatttagc
cagcagagaactacaccagcttctgcctcagctccatcaacacagacacagtcaatattg
tcattcggtgtttctactgtagctgcaagtacttcaaccaccatcacaagcactagtcag
gcaacttcctcagctgttcaagctagcagcactggtcctacaactactgctatcactcca
gtagcatcacaggcacctaagctaccatcagaaattgttgggaaaaatgttgagcagatt
attagggactggaataatgaacttcaagatcgcactgcgaagttccggaagcatgccact
gcaatatctgaatgggacaggagaattctgcagaacaggactgttcttataaggcttgag
gctgaggtggctaaagttgttgaaacacaaacaagcttggagaggcaacttgagttaata
gaaactcaccagaaagaggttgacaaggctctgcagagcatggaggaggaagcagagcgg
gtattccaggatgaacggctgttgcttcgtgaagatgaggctgcttctgcaagagataca
atgtttgagcaatctgaaactgtggagaatgaattgcaacatatgacagaacaagtgaag
tccatcattcagacattgaatgctactcagggtgctgagtttgagactgctgatagtatg
acaccatttgatgttgctgtccggatactggataatcaactgcgttctttaatgtggatc
gatgagaaggctaatgagttctcaagtagaatacagaggctacctaacaacagtgctgca
gctgaacgtgactctggaatgccaaggttttggttaagctga
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