Oryza sativa japonica (Japanese rice): 4325429
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Entry
4325429 CDS
T01015
Name
(RefSeq) nuclear pore complex protein NUP98A
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4325429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4325429
03036 Chromosome and associated proteins [BR:
osa03036
]
4325429
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4325429
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
4325429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
4325429
NCBI-ProteinID:
XP_015630617
UniProt:
Q5VNZ1
Q5VNZ9
LinkDB
All DBs
Position
1:join(16126767..16126947,16128153..16128305,16128847..16129370,16129448..16129570,16129757..16129870,16130092..16130254,16130806..16131401)
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AA seq
617 aa
AA seq
DB search
MMSSSSSWSTPSFGLARESSSLLFTPGLVQHMGPNPSSSWSTPAHPVSDSPTFSFPTPFF
CEPAKGSRVYAYTKTADDLPHKHTLSISAMPAYISKSHEELRHEDYQRGDKGGDGLQKIM
VNSAPVPPMPMLSSVGAPVNMINSSQPAFSLKSKTNFSTPFSPAATADQQSAQLQFSTQN
HYYTSNPFWPAPIGLVRPCSSTGLQSSTPGLNCTGITSFPFLPTKQPSVGTQSSTLFPTT
FVHPSVELQKNASTHCASSQTAPCTTHGGILFGTAANTVSLTTSSTEPTTSSLGPTSCPA
TRHGDAPSTGFACQENVFSNSAAYTSTINADVPTNTIDLLLPNNIRLVRLRFSSTNDGNG
SVASEVHCHHDAKTSETPISLCIYPGENQELIIKSMVQPAKSHTGKQSSPTGGHPDDQSG
RSKVCNSAAGLPSSGPGENQKGNSSAGHKTPKSPLAAPRCEAIAESVLPRLYSADYYTVP
SIVELAVGERDEPGYCSHVKGFTVGRHGYGSVKFDGETDWRRLDIGSIVEFNEREIIVYR
DVSNTPPVGQELNKPAEVTLLNVKCVEQKNGLQFTEGPAVDRYKEILVQWTKDHGAEFVS
FDAAKGEWKFRVKNFNM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcttcttcgtcctggtctaccccaagctttgggttagccagggaatcctct
tcattgttgtttacacctggccttgtgcaacacatgggtcctaatccatcgtcatcttgg
tccacccctgctcatccagtctctgatagtcccacgttttctttccccacgccatttttc
tgtgagcctgcgaaaggcagcagggtctatgcttataccaagactgctgatgatcttcct
cataagcatacactatcaatttctgcaatgccagcatacataagcaaatcccatgaggag
cttcgacatgaagattatcagagaggagacaaaggcggtgatggcctgcagaaaattatg
gttaattcagctcctgtacctcccatgcccatgttatcatctgttggagctccagttaat
atgatcaattcaagtcaacctgctttcagtttgaagtccaaaacaaatttcagtactcca
ttttcaccagcagcaactgctgatcaacaatctgcacagctacagttctcaacacaaaat
cactattatacttccaacccattttggcctgccccaataggattggtgcgaccatgttca
tcaacaggactgcaatcttccacgccaggtctaaactgtaccggcatcacatcatttcca
ttcctgcccacaaagcaaccgtctgtgggaacccaatcatcaactttatttcctaccact
tttgtgcatccatccgtggagttgcaaaagaatgcctccacccactgtgctagctcacag
actgctccttgtacgacacacggaggaattctattcggcacggctgcaaatacagtctca
ttaactacatcatctactgagccaaccacatcatcccttggtccaacctcatgccctgct
actcgacatggagatgcaccttctactggatttgcatgtcaggaaaatgtattcagcaac
tcagcggcatatacatctactataaatgcggatgttcccacgaataccatagatttgcta
cttccaaataacatccggctggtaaggcttagattttcttcaacaaatgatggtaatgga
agtgttgcttcagaggttcattgtcatcatgatgctaaaacttcagaaacacccatttct
ttgtgcatatatcctggagagaaccaagagctgattatcaaatcaatggtgcagcctgct
aagagtcacactgggaaacaatctagtccaactggtggtcatccagatgatcaaagtggt
cgcagcaaagtatgcaacagtgctgctggtctgccatcgtcaggacctggtgagaatcag
aaggggaatagcagtgctggtcacaagacaccaaagtctccactggctgctcctcgttgc
gaagcgatagcggagtctgtactgcctcgcctgtacagcgccgattactacaccgtgcca
tctattgtggagctcgccgtgggagagagggacgagccaggctattgctcacatgtgaag
ggcttcacggtcggcaggcatggctatggcagcgtaaagtttgatggagaaactgattgg
agaaggcttgatattggatccatcgtggagttcaatgagcgtgagattattgtgtacaga
gatgtgagcaatacgccgcctgttgggcaggaactcaacaagcctgctgaagtcactctt
ctgaatgtcaagtgcgtcgaacagaagaatgggttgcagttcacagaggggccggcagtt
gataggtacaaggagattttggtgcagtggacaaaggaccatggcgcagaatttgtgtca
tttgacgcggccaagggagaatggaagttcagggttaagaatttcaatatgtag
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