KEGG   Oryza sativa japonica (Japanese rice): 4325502
Entry
4325502           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4325502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4325502
   03012 Translation factors [BR:osa03012]
    4325502
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4325502
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4325502
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4325502
SSDB
Motif
Pfam: Helicase_C HA2_C R3H DEAD OB_NTP_bind HA2_N nSTAND3 AAA_19 Ank_2 ATPase AAA_22 Ank_5 ResIII AAA_23 AAA_16 Rad17 AAA_7 AAA_11 ABC_tran AAA_25 PhoH
Other DBs
NCBI-GeneID: 4325502
NCBI-ProteinID: XP_015611956
LinkDB
Position
1:join(32955596..32956034,32957225..32957315,32957480..32957789,32957919..32957993,32958366..32958410,32958785..32958875,32958956..32959014,32959517..32959678,32960481..32960533,32960620..32960653,32961062..32961151,32961230..32962231,32962373..32962931,32963769..32964268,32964689..32965096)
AA seq 1305 aa
MAHTSGVAARLNLVFMGRPLARSAQPPPSGPRFSGRAQRRRGSNEATACGKGRSRAGRAA
SPDVVATKPPPLHDEEEEEGGRMVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGG
GGGGVREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGE
RRCLSVYKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKA
VKIQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDAISST
LENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERG
ESVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGIT
HIIVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGF
THPVKTFYLEDVLSILQSVGDNHLDPTTDDLKQSSLLTDDYKSSMDEAINLALDNDEFDP
LLELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGKSALG
WAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDS
NEGAILVFLPGWEDINQTRERLLASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSR
KIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGR
CQPGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIP
ETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACA
ADYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCS
KYFVSSNTMNMLSNMRKQLQNELAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGR
LLPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNS
SVVGSYPLIILATEMVVAPPEDDDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSVSVVI
DRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDLGATMYAIACILSYDGLPA
MITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSFNHPD
GASGHIRSSRTSVGRFDQSRHPQRNNSGPGSSAARTFKRQRNGAQ
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggcccacacgtcaggcgtggccgcccgtctgaacctggttttcatgggccgcccgctc
gcacgcagcgcgcagccaccgccatctgggcctaggttttccgggagagcgcagcggcgg
cgcggaagcaacgaagcgaccgcttgcgggaagggccggagccgagccggccgcgccgcc
tcgcccgacgtcgtagcaaccaagccacccccgctccacgacgaggaggaggaggaggga
ggaaggatggtgaggagagggcggaagggcaaggacgcggcggctggcgccggcggcacc
ggtggcagaggcggcggtgccggcagaggaggcggcagaggaggaagcggcggcgggggc
gggggagggggtgttcgggaggcgacgctggtgcgcgtctcgaaagtgctcgaggacttc
caagcctccgacgcccaggtgtacaaatttgaacctggcatatcgaaacaagagcgagcg
gcgatacatgagatgtgtagaaaaatgggcatgatatccaaaagttctgggaatggggaa
cgacgatgcctatctgtttacaaaagaaaacagaaccagggccttgaaacagaagaagga
cctagccatcttggattttctgtggaagcgagaaatgttttgcaagatctatttatgcat
tatcccccagatgatgcggagctaaatgggcatactgtcaggaattctagtgataaggct
gtaaagattcagtggaagccagatggtgcattttgtaggccagcattgcgcaaaccggat
atattgaagaaggtggagatgcttgcatcgaaagtaaataaatccgaacagttgaggaag
attgtccaagatagatctaaacttccaatttcctcatacaaggatgcaatttcttcgact
ttagagaatcaccaggtggttcttatttctggagaaacaggatgtggtaaaacaacacag
gttcctcaatatatcttggatcatatgtggggtaagggtgaatcatgtaagattgtatgc
actcaaccaaggcgaatatcagctatctcagttgctgagagaatctctgcggaaagagga
gagtctgtgggtgacacagttgggtataagatacgcttggagtcaaaaggagggaagaac
tcatcaatcatgttctgcacaaatggtgttcttttgaggctattgataggcagggtaact
aatatttcaaaagaacaaaatcagaaacgctcatttgatgatgcagttactgggataaca
catattattgtggatgaaatccatgaaagggacaggttttcagatttcatgttggctatt
ctaagagatttgctgccgttgtatcctcatctgcgtttggtactcatgagtgcaacgatt
gatgctgagcggttctcaaattatttcagtggatgcccatttattcaagtcccagggttt
acccatcctgtcaaaactttctatttggaggatgtgctttctattttgcaatctgtaggc
gataatcatcttgatcctacaacagatgatctgaaacagagcagtttgttaacagatgat
tacaaaagctcaatggatgaagccattaacctagctttggataatgatgaatttgatcct
cttcttgagcttatttctgctgagcagaaccaagaaattttcaattaccagcactcagaa
actggtgtgacacctttgatggttcttgctggaaaaggtcaggttggggacatttgcatg
cttctatcatttggggtggattgttctacacgggatcatgatggaaaatctgcattaggt
tgggcagaacaagggaatcagcaagaggtttgcgaagttattaagaaacatatggaatgt
ggttcagcaaagttaactgaagagaatgagctgctcaataaatacttggcaaccatcaat
cctgagcacatcgatactgtgctaatagaacggttgctcagaaaaatttgtgttgattcc
aatgaaggagctatcttggtgtttcttcctgggtgggaagatataaatcaaacacgggaa
aggttgcttgcttctcccttctttcaggattcgtcaaagtttcttgtgttgtcactccat
tccatgatcccatcttcggagcagaaaaaagttttcaagcgtccaccagcaggatctcgt
aaaataattctctcaaccaacatagcagagactgctgtgacaattgatgacgtcgtattt
gtcatagatagtgggagaatgaaagagaaaagttatgatccatataataatgtctcaaca
cttcattcttcctgggtttcaaaagctaatgccagacaacgtcaagggcgtgcgggtcgt
tgtcagccaggaacgtgctaccatctctactctagatttcgagcagcctcattactggaa
taccaaatccctgaaataaagaggatgcctattgaggaactatgtttacaggtcaaactg
cttgatccgaactgcagaattgcagactttttaaggaaaactttggaccctccaattcca
gaaactgtaagaaatgctatcaccgtacttcaggatcttggtgctttgactcaagatgaa
caactgacagagttaggggaaaagttgggctcccttccggtccatccatctacaagcaag
atgctcttgtttggtatattaatgaattgcctagatccggcgttgacattggcatgtgca
gcagattatagagatcctttcctccttccaatggctccagatgagaggaaaagggctgct
gcagccaaagttgagcttgcttcattgtatggtggatacagtgatcagcttgcagttgta
gcagcaatggactgttggagacgtgccaaagataggggccaagaagctcaattttgttct
aagtattttgtgtcttctaacaccatgaatatgctttcaaacatgaggaaacagcttcag
aatgaactagcccaaagaggatttgttcctgtagatgcatctgcatgcagcttaaatgct
agagatccaggtatcattcgtgctgtccttatggccggtgcttatccaatggtagggaga
ttgcttccccctcgcaaaaatactagaagagcagtcattgaaacagcaagtggtgccaaa
gttcgactgcatccacattcttgcaactttaacttgtctttccgtaagacttctgggaac
ccattagtgatatatgatgagatcactcgaggcgatggtggaatgtacataaaaaactct
tcggttgttgggtcctatcctttaattattcttgctacggaaatggttgttgctccacct
gaggacgatgatagtgatgaagaggatggggattctagtgaggatgaaactgagaaagtc
actttgggacaacataaagagataatgtcttctcctgataactctgtttcagttgttatt
gatcgatggcttcggtttgatgctacagctcttgatgttgctcaaatatactgccttagg
gagcgcctagcatcagctattcttttcaaagtcaaacatccacaggatgtcctcccacct
gatcttggagcaactatgtatgctattgcgtgcatcctatcatacgatggcttgcctgct
atgattacatctgatgatgttgctacaagtcagggttcaaaccaaagttcagctgaatca
agcagattctctcagggtcgtagagtcggttatattccacctggcggtttcctcatgtct
ttgttatcggataaacctcttaatgcgcctcattttcagaagtcctttaatcatccagat
ggagcttcagggcatattcggtcatcgaggacctccgtcggtagatttgatcagtctcgc
catcctcaacgtaataattctggacctgggagttcagcagcacggactttcaaaagacag
cgcaacggtgcacagtga

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