Oryza sativa japonica (Japanese rice): 4325536
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Entry
4325536 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4325536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4325536
03019 Messenger RNA biogenesis [BR:
osa03019
]
4325536
04121 Ubiquitin system [BR:
osa04121
]
4325536
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4325536
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
4325536
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4325536
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4325536
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
4325536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
4325536
NCBI-ProteinID:
XP_015632103
LinkDB
All DBs
Position
1:complement(join(5955489..5957192,5957347..5957461,5958788..5958879,5958965..5959013,5959123..5959206,5959935..5960035,5960141..5960324,5960508..5960635,5961713..5961805))
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AA seq
849 aa
AA seq
DB search
MTTQAKEKCPLCTEEMDLTDKQLKPCKCGYEICLWCWHQIMEMDQKEECGGRCPACRSIY
NKDRIMGTSISNQILKELCADKSNFQKEQAKSQKQKPVKVQSGVTEESIDPYSVRVIQRR
LVYIVGMPSEFASDKVLRQHNFLGQYGKIESIIIDNIGANQQIPDSGRVYVTFSREEEAF
RCIEAVNGFILDGRPLKATFGVTRYCHVWLSNKVCRKPICSYVHQKAPPEDICTKDDVAV
YCARLQHLLGMDTKGLRSGNTLPPPGDCVSRTTVCNGNSKDKTCSDDYGVLHNHGNKNLG
TLPATTLQEEKKRNSTPNNQQGLSASVSQELPPLGPKVHHLNDQLASCGDKPQASVQSAN
GNLNSKQVTAAGNGTVGTLSAKQYVNVVSQGSSGSGRRFTVLTRQTASSDTRSKATGQVG
NASSDSQKLTSANNEHSDRIKISRSDNVKLVSQRPEEPSQMLANHLTGAIDKTHVDTDEK
NARSDINEKTVCGIQMQLKESTAAHRSTVLQSLRDNPMSNNLPTLDVKSQISVVPDKPSD
SQSASKTQLQPSNHKKTAVCSSDTANASDACGIANNQVLFPGGKHQTSSQGEDHSLYKRD
KSQSGDQLSSQHPGNVFSPRLLTSLSSIDITAKENKGIKRHVCPPGFEELHRPSDSDKIT
SVSSPTSSIMCSGPDTLVQDSCSAKDQPDFISWVSECLEDGGETTQSNRSIPSTLSSTDA
TWRYMQYPASCFSGASNHFLVSPYPRGLSQHTVGRIENTMNCCCSHPSVSGIANHKPEYW
SGSDHSYMSTGGYDVFSQSATLGMIAGMVGTSPQQPSPPVHYNDWTTGSADSDLKSPQVD
HTYPMYSLF
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccaagctaaagaaaaatgcccactttgcacagaggagatggatttgacagat
aaacagctgaagccgtgtaaatgtggatatgagatttgtctttggtgttggcatcagata
atggaaatggatcagaaggaagaatgtggcgggagatgccccgcgtgtcgttctatctac
aacaaggacaggatcatgggaacaagcatcagcaaccaaatattaaaggaactttgtgct
gacaaatcaaactttcaaaaagaacaagccaagtctcaaaagcagaaaccagtaaaagtt
cagtcaggagtgacagaagaatcaatagacccatatagtgttcgtgtgattcaacgcagg
cttgtttatattgttgggatgccttctgaattcgcgagtgacaaggtgctgaggcagcat
aattttcttgggcaatatggaaaaatagaaagtattattatcgacaatattggagctaac
caacagattcctgactctggccgtgtatatgttaccttttcaagggaggaagaagctttt
cggtgcattgaggcagttaatggtttcatcttggatggtagacctctaaaggcaactttt
ggcgttacaagatattgtcatgtatggctaagcaataaggtttgccgaaagccaatctgt
tcgtacgtgcatcaaaaagccccaccagaagatatttgtacgaaggacgatgtcgctgtg
tactgtgcaaggcttcagcatttgttgggaatggatacaaagggtctccgttcaggaaat
actttgccccctcctggtgactgtgtatcaagaactaccgtttgtaatggaaactccaaa
gataagacctgcagcgatgattatggagtactacacaatcacggtaacaagaatcttggc
acgctgccagctacaactcttcaagaagagaagaaacgtaatagcacacctaataatcag
caaggattgtctgcctccgtgtctcaggaattaccaccgcttggaccaaaggttcaccat
ctcaatgatcagttggcttcctgtggtgataagccccaagcatctgtgcagtcagcaaat
ggcaatttgaattctaagcaagtaactgcagcaggaaatggaacggtgggcaccttatca
gcaaaacaatatgttaatgtagtttcacaaggatcaagtggttcaggtcgcagatttact
gtacttactaggcagacggcttctagtgatactcggtctaaagcaacaggacaagtcggt
aatgcctcttcagattcccagaagcttacttcggcaaacaatgagcacagtgacagaatt
aaaatttctaggagtgataatgtaaagttagtttcgcagagaccagaggaaccttcccaa
atgctagctaatcatttgaccggagcaattgataagacccacgttgatacagatgaaaag
aatgctcgctcagatataaatgaaaaaacagtttgtggtattcagatgcagcttaaagaa
agcactgcagcacacagatcaactgtgctgcagagtttgagggacaatcctatgtccaat
aatcttccaacattggatgtcaaatctcagatatcagttgtgccagacaagccttcagat
tcacagtcagcatctaaaactcaattgcagccctcaaatcataaaaaaactgctgtttgt
agttcagatacagccaatgcaagtgatgcatgtggcatcgctaataatcaggtgctgttc
cctggtggtaaacatcaaacttcatcacaaggggaggatcacagcttgtacaagagggat
aagagtcagtcaggagatcaactttcatctcagcatcctgggaatgttttctcaccaaga
ctactcacttcactgtcatccattgatataactgccaaggaaaataaaggaattaaaagg
cacgtttgtcctcctggatttgaggagcttcacaggccgtctgattctgacaagattaca
tcagtaagctccccaacttcttctattatgtgctctggacctgataccctggtacaagat
tcatgctctgctaaagatcagccagacttcattagctgggtttcagagtgcctagaagat
ggtggagaaactacacaaagtaataggagcataccttctactctcagttccacagatgcc
acttggagatacatgcagtatcctgcctcctgtttttctggtgcatcaaatcactttcta
gtatcaccgtaccctagaggattgtcacagcacacggtgggtcggattgaaaataccatg
aattgctgctgttcccatccatctgtcagtggcatagcaaatcacaagcctgaatactgg
agtggaagtgaccatagctacatgtctactgggggatatgatgtattcagtcaaagtgca
acattaggcatgatagctggtatggtaggcacatcgccccaacaaccttcgccacctgtt
cattacaatgactggaccacgggaagtgctgattcagatttgaagagtccacaggttgat
catacataccccatgtactcgctgttctga
DBGET
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