KEGG   Oryza sativa japonica (Japanese rice): 4325567
Entry
4325567           CDS       T01015                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4325567
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4325567
Spliceosome [BR:osa03041]
 Complex C
  Other components
   Complex C specific factors
    4325567
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 HA2_N DEAD AAA_30 AAA_19 AAA_29 AAA_7 T2SSE Cas3-like_C_2
Other DBs
NCBI-GeneID: 4325567
NCBI-ProteinID: XP_015622104
UniProt: Q5QNI3 A0A0P0V008
LinkDB
Position
1:join(6122467..6122579,6122698..6122842,6123589..6123663,6124479..6124568,6124748..6124827,6125087..6125156,6125268..6125353,6126077..6126146,6126241..6126336,6127210..6127315,6127498..6127544,6127621..6127704,6127776..6127829,6128028..6128128,6129321..6129411,6130566..6130730,6131726..6131815,6131918..6131989,6132377..6132475,6132602..6132688,6133476..6133529,6134286..6134365,6134459..6134606)
AA seq 700 aa
MSRFWRPGSEKPTAAIVEDEEGGVLFLPTSTSSSSSSGFGYASLERQRQRLPVYKYRKAI
LYLVERHATTIVVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQSVASRVAEE
VGVRLGEEVGYTIRFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSI
STDMLLGLLKKIQRRRPDLRLIISSATIEARSMSTFFNIRRKNSMLESADHLPNPEPAIL
SVEGKGYTVEIHYVEEPVSDYLQAAVNTVLIIHEKEPPGDILVFLTGQDDIDAAVKMLNE
EIQHRGRHYLDLLILPLYSGLPRGDQDLIFTPTSKGKRKVVISTNIAETSLTLEGVVYVV
DSGFSKQKCYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEFYLKEMQPE
GIPEMQRSNLVSCITQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDEDAKLTV
PLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKLR
FAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFGIPLT
SCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgtcgaggttctggaggccggggtcggagaagccgacggcggcgatcgtcgaggacgag
gagggcggcgtcctcttcctgcccacaagcaccagctcctcctcctcatccgggtttggg
tacgcgagcttggagcggcagcggcagcggctgccggtgtacaagtaccggaaggccatc
ctctacctggtggagcggcacgccacgaccatcgtcgtcggcgagaccggcagcggaaag
tccacgcagatccctcagtaccttaaagaggctggatgggccgagggtggtcgacttata
ggctgcactcaaccaagacgattggccgtgcagtcagttgcatcaagagtagcggaagaa
gtaggtgtgagactcggagaagaagttggttacacaatccgatttgaggatcaaacaaat
ccaggtatgaccatgattaaatttctgacagatggggtattgatcagagaaatgatggaa
gatcctcttctgaccaagtatagtgtaattatggttgatgaagcccatgaacgatccatt
tcaactgacatgttgctgggtcttctgaaaaagattcaacgacgtcggcccgacttgcgt
ctaatcatatcctctgcaacaattgaagcaagatccatgtcaacttttttcaacattagg
cgaaagaattctatgcttgagtctgctgatcatttgcccaacccagaacctgctattctt
tctgtggaaggtaaaggttacacagtggaaatccattatgttgaagaacctgtttcagac
tacttacaggctgctgtgaatactgtacttattattcacgaaaaggaaccaccaggggat
attttggtatttttaactggccaggatgacatagacgcagctgttaagatgctaaatgaa
gaaattcaacaccgtggaagacattatttagacctgctgattctgcccttgtactctggc
cttccgcggggagatcaagacctcatttttactccaacttcaaaaggtaaaaggaaggtt
gtgatatcaacaaacattgctgagacgtcattaactctagagggcgtggtgtatgttgtt
gatagtgggttttccaagcagaagtgttacaatccgatttctgatatcgagagtttagtt
gtcgcaccaatatccaaggcatccgcaagacaaagagcaggccgagctggaagggtgcga
ccaggaaagtgctttaggctttatacagaggaattttaccttaaagaaatgcagccagaa
gggattcctgaaatgcaaaggtctaaccttgtttcctgcataacacagttgaaagctcta
ggaatagacaacattttgggatttgattggccagcttctccatcaccagaggcaatgatt
cgagctcttgaagttctatattccctgggaatccttgatgaagatgccaaactaacagta
ccccttggcttccaagttgctgagatccctctggaccctatgatttcaaaaatgatcctt
tcagccaataatttcggatgctctgatgagatattgaccatagcagcatttctatctgtt
caatctgtgtgggtttccatgagaggagtgaaaaaagagtttgatgaagctaagctccgt
tttgctgctgctgagggagatcatgtgacgttcctgaatatctacaaaggatttcatcaa
tctggaaaatctagtcagtggtgttacaagaactttttgaaccaccaagcattgaagaag
gttattgacatcagggagcagcttgtcaggattatcaagaggtttggcataccactaaca
tcatgtgatagagatatggaggcagtaagaaaagctattattgctggtgcatttgcttat
gcatgccatctagaggaatacagccagaatgggatgtacaaaacaataaggacctcacaa
gaagtttatattcatccttcttctgtgctatttagggttaatccaaagtgggtcatctac
cagtctctagtttcaactgataagcactatatgcgtaatgttattgccattgaaccatca
tggcttacggaagctgcaccacatttttatcagttccggacacccaatcctgcccttcac
taa

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