Oryza sativa japonica (Japanese rice): 4325594
Help
Entry
4325594 CDS
T01015
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4325594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4325594
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4325594
mRNA degradation factors
5'-3' decay
Decapping complex
4325594
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
4325594
NCBI-ProteinID:
XP_015616802
UniProt:
Q5ZAQ3
B7EQG1
LinkDB
All DBs
Position
1:join(33038907..33038970,33039370..33039524,33040827..33040883,33041706..33041775,33042308..33044391)
Genome browser
AA seq
809 aa
AA seq
DB search
MRGVESGGGGGGASSSSPAAAGNFDAGQYAFFGKEPLEGLELSCLEDGGGDGNGGGFSGP
EDGLYRLSSVGEEIDNLSNLSEIDDLASTFAKLNRSISGTRNPGVIGDRRSISRGSSLTV
DWAEDAEFPNWVDQDILEGEELQESKRWWSQSRSLGQQGDAKPLSRTSSYPQQPLQHRAS
EPIIAPQSPPFTSFPPPGARSPYTAQGLTRHGSIPSVGAGLQMGSPSMSLPSSSYHMAGL
SHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLPNMLQKQISLPNSPMSSL
LFSQQQQRLAQVQVQPSHQNYLNLPPHLFYQHHSPELTGRFDSISNVPSLRDKRSRSGRG
KHSTRFSQPLTDTGSQNGDSGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQA
CIAKKGASSRQKANFAPTSMKDLPSKSRSSSDHHAYLQVDALGRVSFSSIRRPRSLLEVD
LPSSGDGSHDQKSSLRPLEKEPMLAARVTVEDAICLLLEVDDIDRLLQSSQAQDNSFQLR
RRRQVLLEGLATSLQLVDPLGPSKSSHSSGLAPKDDLVFLRIVSLPKGRKLLSRYLRLLT
PGSELTRIICMAIFRHLRYLFGGLPSDSSAAETTVALAKTVSSCVLHMELGALSACLAAV
VCSSEQPPLRPLASSAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQASFDAFF
GLLTKYCLSKYESIKQMFVMQSPCSVTGSEVSKATSREMPVELLRASLPHTNDQQRQLLL
DFAQRTMPVTGINPTGANGGYITSESVPG
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgcggggtgtcgagtcgggtggcggaggcggcggcgcgtcttcttcctcccccgccgcc
gcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagggactc
gagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcgggcca
gaagatgggctgtaccggctctcttctgttggagaagagattgataatctgagtaacttg
tcagaaattgatgatcttgcgagcacttttgcaaagttgaaccgaagcattagtggaaca
cggaatcctggtgttattggtgacagaagatccatctcaagaggaagttctctaactgtt
gattgggctgaagatgctgagtttcccaactgggtagatcaagacatattagagggtgag
gaacttcaggaaagtaaaagatggtggtcacagtcacgttctctggggcagcaaggggat
gccaaaccattgagccgaacatcttcatatcctcaacaaccattgcagcaccgcgcaagt
gaacctatcattgcaccacaatctcctccatttacatcctttccacctccaggtgctaga
tcaccttatactgctcaaggccttacacgtcatgggagcattccatcagttggtgctggt
ctacaaatgggttctccaagcatgtcacttccaagttcttcatatcatatggctggacta
tctcatggactaccatatggagggagcgtgtcctttggttctccaaatcttcctggaagc
aatccaatacaaaatgattggccaaaccaagccaacccgtatgctgtggatcaatttaat
ctacttccgaacatgttacagaaacaaatatcacttccaaatagcccaatgtcatcactg
ctattttctcaacagcagcagagattggcacaagttcaagtccagccatcccatcagaat
tacctaaatttaccacctcacctattttaccaacatcactccccagagttaacaggaagg
tttgattctatcagcaatgttccttcattgagagacaagaggtcaaggtcaggaagggga
aaacacagcacacgtttttctcaaccattgactgatactggtagtcaaaatggtgatagt
ggtggactaaaattcaggtctaagtacatgtcatctgaagagatcgaatctatcttaaga
atgcagcattcagcaagtcacagcagtgatccttatgtagttgattattaccatcaagct
tgcatagcaaaaaagggtgccagttccaggcaaaaggccaattttgccccaacatcaatg
aaagacttaccttccaagtccagatctagcagtgaccatcatgcatatcttcaggttgat
gctctagggagggtttctttctcttccatacgtaggcctcggtctcttcttgaagttgac
cttccttcatctggtgatggttctcatgatcagaagtcttctctgaggcccctggagaaa
gaaccaatgctggcagctagagtcactgttgaagatgccatctgcctacttcttgaggtg
gatgatattgaccgtctattgcagtctagccaggcacaagataacagtttccaactgagg
cgaagacggcaggtcctccttgaaggtctagctacatcacttcagcttgttgaccctctt
ggtccgagcaaatcaagccattcatctggattggcccctaaggatgatcttgtttttctt
cggattgtttctcttcctaaaggacgcaaacttttgtcacggtaccttcgacttcttacc
cctggaagcgagttgacccgtataatatgcatggctatttttcgacatctgaggtacttg
tttgggggtttaccatcagattctagtgcagcagaaacaacagttgctcttgcaaagact
gtttcatcttgtgtgctccatatggaactaggtgctcttagtgcttgccttgctgctgtc
gtatgttcatctgagcagccacctctgcgtcctcttgctagctctgctggtgatggggct
tctcttattattaaatcagtactggaccgagcaaccgagttgctgactgaccaccatgct
gcagccagctatacagtgtcaaaccgaactctctggcaggcatcatttgatgctttcttt
ggactcctgacaaaatactgcctcagtaagtatgaaagtattaagcagatgtttgtcatg
cagtcaccatgctctgtaactggatctgaagtctcgaaagcaaccagcagggagatgcca
gttgagttgctacgtgcaagccttcctcatacaaacgatcagcaacgccagctgctgctt
gattttgctcagcgaacaatgccagtgaccggtattaatcccactggggcaaatggtggg
tacatcacctctgagtctgttcctggttga
DBGET
integrated database retrieval system
