KEGG   Oryza sativa japonica (Japanese rice): 4325848
Entry
4325848           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K24155  rabconnectin-3a
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04142  Lysosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    4325848
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4325848
Membrane trafficking [BR:osa04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    4325848
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    4325848
   RAVE complex
    4325848
SSDB
Motif
Pfam: Rav1p_C WD40 WD40_Prp19 WDR55 WD40_WDHD1_1st Beta-prop_EML WD40_CDC20-Fz Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_TEP1_C PHD_4
Other DBs
NCBI-GeneID: 4325848
NCBI-ProteinID: XP_015615157
LinkDB
Position
1:complement(join(21287669..21287782,21287911..21288089,21288163..21288423,21289089..21289222,21289306..21289529,21290302..21290730,21291596..21291652,21291739..21293049,21293136..21293504,21293623..21293868,21293957..21294229,21294530..21294694,21295195..21295423,21295594..21296035,21297019..21299595,21299687..21300053))
AA seq 2458 aa
MGEPDELPPLPLALHPPHLIPPAPAADPRALSFLPDLGGLPWVAYGAASFLVVSHLPSPP
REGSSSSGGGGGGDDDGPFFRQAIDLRAPVSAVSWCRRGGGELAAAAGSSVSVFQPAPSS
SPGSFGWVLRWAITETFAVAAVAWTGSGDGILLAGEGVAMWARAESSWKLAWRCSPQVAQ
SLASATHFLQGPVATAAATPSSEGGVPPVLVIVNDAKVGVEKVELAHPKPVSMIQWRPRS
LFVSDQSEVRREILMTCCLDGTLRLWSEDEAAKSKKHRVLQRSFSVIAVIEMSNTLNGVL
GVDITVKWAIETGSVVSRDEDDNFTLFSGDPGHNQVGKCEWLVSAGPGASVNFWAVHCID
DVSPPRYPRITLWKQVKLQSWTQSASGQQKSIDDSFFVEAVISRGLSSGPPTTCSLLHLL
HDNSFIWSRLSSNLSLNSGGHALSDSAKSLSCYSSQTINQHGHNGSIKQVSVHPYSCEIE
LAVSMDSSRTLHFWSLSTLSTLISTLHAPTYPLWKLLCKFDLCDIQADVEYSCLCWAPSV
IQQNRFLVLGSEKGADCFVVSIQNEGDVLSCQKMFTIPFFEGSNAEGPPDSIHTIPLTSN
CDGPFVNNSFVVVCLWRTSFQALSWKVVLHLENQNKCGMCLCGFSASSLSTADQGRHGTY
LNADMFSAVICKGSSVFPTCLDGEYPTCVSATPLNNTVLSLQQHGSGTASCYHIATGYSD
GTVKLWKMSFADNPLHTEKESHIWQLVGTFGADRGPITAISLSNCGRIATVGRNVQKNTT
SIHIWKAVKLMGDGSFLLEDALTLQGSVVGLDWLSLGDGRFLLAVYLLNELHIYSHKHPS
FKNVLHTVNSKEKHLWSCIALSHSPHDIASFLWGPKATGVLVHKNHLALFSSWLVRRANE
SSTQICDCPAADIHELPCTKHFNEDIFGRFSLSENYSNTMLLQKHSAHCSNDLWNLLDIA
AKMSGPLASYHPRALIQSLYSGQWKRANTVLQHLVQSMQANKISNTLLECSFCGKSCHNI
PECPLSESFTDMTSNDISNRGLLWGDNQRSTAFSLLSPSNSYPRMEDINTTTSTSQSSEI
NKLLATNVSISTISDMERTQIVALSDLLGKITDQSHASPYKSLDEAGRRFWVAVQFERLY
ALRRSEDPSSAEVFHVDSASIAWALQSDCQDDLLNSVLPAEPSWSEMRNLGMGLWYTNVS
QLRTKMEKLARLQYLKSKDPKDCALLYIALNRTKVLVGLFKISRDEKDKRLYEFLSRNFQ
EEKHKSAALKNAYVLMGRHQWELAIAFFLLGGDTSSAISVCAKNLQDEQLAIVICRLLEG
SGGPLERNLIANVLLPEAVDKGDHWLSSLLEWMLGNYSQSVNQLLDCHLKSLIEESSIPG
DTNVFADPGVGQYCAIIATKSSFRNCVGEAQSANLSKLSLAMASCALNRCGLPLEALEYL
CCNSGIEGKDNTSLDGGDKKIVYGILNPFHASSNWLSASVVSDVESNLKITMASKYLSRV
LRNQSLCSRCSLPLTKDKVLQEFNSNHVNELSRDVKAALQVFDKKFSLQVADIAEKILTF
CCNDGIFFLAYVLLWGSISSDVGTGTCGLEGCAFHPIDYMFMVSSKESCKFLTQYVVSCC
FICSALNMDCANTTPCTIKVGKYIMASLSHFLSTSRLLLKQDNTRTFVLGRTSAMLTVMD
LLEYNMEFSFSWLCHDIKALLTMTSPVIGACVNRESFQVLLDQLLQAVHDKIHGVSIGTD
GGTVNGLLCNIQQERSENQSLPIDEKWHLIGISLWTRLSSFMKQFLTEFVEKERIELETS
ASDVEFKDLISSVVAKFLMGSLHFVSSLLVKLHASFFREKVLKKSNSSVLFWLSQPRSNN
NSHEQFSSIFQLANSENIEVFFDTLWEISAHPVDICTAFVDEEMNCFPLNSISLTRSWKA
MTEATLVESENNFAQRSEENRDNLSSKNNEKIQRSIDNTPYGVEVTLEPKRKGLIADFER
PRELVRRNGELLEAICLNSINEQQGAIATNRKGLVFFNWNDKQDNKNLAEYIWAGSDWPL
DGWAGCESTPTSTSFSPSVGLGRRKGSHLSSGGPTISLGSLAKPGRDLTGGGAFGIPGYA
GIGASGFGWGEPDEFEDFVDPPATLENIHSRALSRHPSLPLLLVGSSNTHVYLWEFGKDS
AMATYGVLPAANIPPPYALASISAVQFDYYGQRFATAALDGTVCTWQVEVGGRSNVHPTE
SSLCFNTHASDVAFLTASGSVLAAAGCSSNGANVVIWDTLAPPSTCQTSIMCHEGGVRSL
SVFDRNIGCGSISPLIVTGGKSGDVTLHDFRFISTGKTKHHRSSNEHDVKASSTSMHDTK
SGTSNGVSNSGMIWHIPKAHTGSVSSVSTIPNTSLFLTGSKDGDVKLWDAKSSQLVFHWQ
KLHERHTFFQPTSRGFGGVVRAAVTDIQVLPNGFVSCGGDGSVKLVQVKNDFADVRPH
NT seq 7377 nt   +upstreamnt  +downstreamnt
atgggggagccggacgagctgccgccgctgccgctcgccctccacccgccgcatctcatc
ccgccggcgcccgccgccgacccccgcgccctctccttcctccccgacctcggcggcctc
ccctgggtcgcctacggcgccgcctccttcctcgtcgtctcccacctcccctcccctccc
cgcgagggaagcagcagcagcggcggcggcggcggcggcgacgacgatggcccgttcttc
cgccaggccatcgacctccgtgcccccgtgtccgccgtctcctggtgccgacgtggcggg
ggcgagctcgccgccgccgccgggagctccgtgtccgtgttccagccggcgccgtcctct
tccccaggatcgtttggctgggtgctgagatgggctatcaccgagaccttcgccgtcgcc
gccgtggcctggacgggctccggcgacggcattctgttggccggcgagggcgttgccatg
tgggctagggcagaatcctcctggaagctcgcgtggaggtgctcgcctcaggtggctcag
tcccttgcctccgctacacacttcctccagggtcccgtcgcgacagcggcggctactcct
tcttccgagggcggcgtgcctcctgttctggtgattgtgaatgatgccaaggtgggtgtg
gagaaagtcgagcttgcgcaccctaaaccagtatccatgatccagtggagacctaggtcg
ttgtttgtcagtgatcagtctgaagtgaggcgagagatactcatgacgtgctgcttggac
gggactctccggctgtggagcgaggatgaggcagccaagtcaaagaagcatcgggttttg
caaaggtccttcagtgtcattgcggtaattgagatgagcaacactctgaatggagtgctg
ggagttgatataactgtgaaatgggcaattgaaactggcagtgttgtatcgagagatgaa
gatgacaatttcacattgttttcaggtgaccctgggcacaaccaggtaggcaaatgcgag
tggttggtaagtgctggccctggggcttctgtaaacttttgggctgtccattgtatcgat
gatgtatctccaccaaggtatccacggattactctatggaaacaagtcaaactgcagagt
tggacgcagtctgcttcaggacaacaaaaatccatagatgactcgttttttgttgaggct
gttatatcaagagggctatcttctggcccacctacaacatgttctttgcttcatttgctg
catgataattcatttatttggtctcgcttatcctccaatttatcattgaattctgggggg
catgctttgagtgattctgctaaaagtttgtcatgctattcatcccaaactatcaatcaa
catgggcataacggtagcatcaaacaggtgtctgtccatccatacagctgtgaaatagag
ctagctgtttccatggattctagcagaactctacatttctggtctctttcaaccttatca
actctcatatcaactttgcatgcacctacttatccattatggaagcttttgtgcaaattt
gatctgtgtgacattcaggcagatgtggaatactcatgtctgtgttgggctccttctgtt
attcaacaaaataggtttcttgtccttggaagtgaaaaaggagccgattgttttgtagtc
agtattcagaacgaaggggatgttctttcatgtcagaaaatgttcacaattcctttcttt
gaaggtagtaatgcagaaggcccacctgacagcattcataccatacctttaacttctaat
tgtgatggtccttttgtcaacaacagctttgtagttgtatgtctatggaggacgagtttt
caagcattatcatggaaagttgtcctacatctagaaaatcaaaacaaatgtgggatgtgt
ttgtgtggtttttctgctagctctctttctactgcagatcaagggagacatggaacttac
cttaatgctgatatgttttcagcagttatttgtaaaggttcttcagtcttccctacatgc
ctggatggagaatatcctacatgtgtttctgcaacgccactgaacaatactgtattatct
ctacagcagcatggttcaggaactgcttcatgttatcacattgctactgggtattctgat
ggcactgtgaaactgtggaagatgtcttttgcagataaccctttgcatactgagaaagag
agccacatctggcaactagtaggcacgtttggtgccgatcgaggaccaattactgcaatt
tcactgtccaattgtggtagaattgctactgttggtagaaatgttcagaagaataccacc
tccattcatatctggaaagcagtaaaactcatgggagatgggagttttctcctggaggat
gcactaacgcttcaaggttctgttgttggtttggattggctatctttaggcgatgggaga
tttttacttgcagtctaccttctcaatgagttgcacatatattctcataagcacccttcc
tttaagaatgtattacacactgtgaattcaaaagagaagcatctttggagctgtattgca
ctatcccattctccacatgacattgctagcttcctttgggggccaaaggcaactggtgtg
cttgttcataagaatcatcttgcactcttcagttcatggttagtaagaagagccaatgaa
tctagtacccagatatgtgattgtccagctgcagacatacatgaattgccttgtactaag
cattttaatgaagatatctttggtagattcagtttatcagaaaattacagcaacacaatg
ttactacagaaacacagtgctcactgttctaatgatctatggaacttgttggatatagct
gccaaaatgagtggacctctggcatcatatcacccgagagcacttattcagtctctttat
tcaggtcaatggaaacgggcaaacactgttctgcagcatcttgttcaatccatgcaagca
aataaaatatcaaacaccttgttggagtgcagtttctgtggtaaatcatgccataatatt
cctgaatgccctttatctgaaagcttcaccgatatgacatctaatgacatatctaataga
gggttactttggggtgacaatcaacgtagcacagcctttagtttgctatcaccatcaaat
tcatatcctcggatggaggatatcaacaccaccactagcacatctcaaagttcagaaata
aataagctccttgctacgaatgttagcatatcaacaataagtgacatggagagaacccag
atagttgcactttctgatcttttgggtaaaattactgatcagagccatgcatctccctat
aaaagccttgatgaagcagggagaaggttctgggttgctgtgcagttcgaacgcctatat
gcacttaggagatctgaagatccatccagtgccgaagtcttccatgttgattctgcttct
atcgcgtgggccttacagtctgattgtcaggatgatctacttaattctgttcttcctgca
gaaccaagttggtctgagatgcgaaaccttggtatggggttatggtacaccaacgtgtcc
cagttaagaaccaagatggagaagttggcaaggctgcaatatcttaaaagcaaggaccca
aaggactgtgctcttctctatatagcattaaatagaacaaaagtattagttggcctattc
aagattagcagagatgaaaaggataaacgtctctatgagtttctctccaggaacttccag
gaagaaaaacacaaatctgctgctctgaaaaatgcatatgtgctaatgggaaggcatcaa
tgggagcttgctatagcatttttcctccttggaggtgatacatcctcagccatcagtgtt
tgtgcaaagaaccttcaagatgaacaacttgctattgtaatttgtcgacttcttgaggga
tctggagggcccttggagcgtaatctcattgctaatgtactgctccctgaagcagttgat
aaaggagaccactggctttcaagcctacttgaatggatgttagggaactactctcagtct
gtgaatcaattacttgattgccacctcaagtcactgattgaagaatccagcattcccggt
gatacaaatgtctttgcagaccctggagtgggtcagtattgtgcaatcattgcgacaaaa
agtagtttcagaaactgtgttggtgaagctcaatctgcaaatttatctaagctttcatta
gcaatggcttcatgcgccttgaacagatgtggactgcctcttgaagcacttgaataccta
tgttgtaactcgggcatagagggaaaggacaacacctcactggatggcggagacaagaag
attgtttatggaatattgaaccctttccatgcttcgtccaactggctctcagcatctgta
gtcagtgatgttgaatcaaacctgaaaataactatggcttcaaaatatctgtcgcgcgtg
ctgagaaatcagtcactctgttcacggtgcagcctaccactaactaaagataaggtcctg
caagaattcaacagtaatcacgtgaatgaactttcacgtgatgtcaaggcagcgctacaa
gtattcgataaaaaattctcacttcaagttgctgatatagctgagaagatccttaccttt
tgttgcaacgatggtatattttttctcgcgtacgtgttgttatggggtagtatatcatca
gatgttggaaccggtacttgtggtcttgaaggttgtgctttccatccaattgattatatg
tttatggtgtcaagtaaggagagctgcaagtttcttacacaatatgttgtctcctgctgc
ttcatatgttctgctctgaacatggactgcgctaatactactccatgcacaattaaagtg
ggcaagtacattatggcaagtttatcacacttcctgagtactagcaggttacttctgaaa
caagacaatactagaacttttgtgttaggtcgtacatcagctatgcttacagttatggac
ctccttgaatacaacatggagttttccttttcttggttatgtcatgacataaaagcattg
cttaccatgaccagtccagttataggtgcttgtgtcaacagagagtcctttcaagtacta
ttagatcagttgctgcaagctgtacatgataaaattcatggtgtatcaattggcacagat
gggggcacagtcaatggtttgttgtgtaatatacaacaagaaagaagtgagaatcagagt
cttccaattgatgaaaaatggcatttgataggtatttctttgtggactcgattgtcatct
ttcatgaaacagtttttgactgagttcgttgaaaaagagagaattgaacttgaaactagt
gcaagtgatgtggaattcaaggacctcatatcttcagttgttgcaaagtttttgatgggc
tccctccattttgtgtcatctttgttagtaaaattgcatgcttcatttttcagagagaaa
gtactgaagaagtcaaattcaagtgtgcttttctggttatctcagccaaggtccaacaac
aatagccatgagcagttctcaagtatttttcagcttgctaacagtgagaacatcgaagtc
ttttttgatactttgtgggaaatatctgctcatcctgtggatatctgcactgcttttgtg
gatgaagaaatgaattgctttcctttaaacagcattagtttaacacgatcctggaaggct
atgacagaagctacattagttgagtctgaaaataattttgctcaaagaagtgaagaaaat
cgtgacaatttaagttccaagaacaacgagaaaatacagagatcaattgacaatacccct
tatggtgtggaagtcactcttgaacctaaaaggaaaggtttaattgcagattttgaaaga
cccagagaacttgtaaggagaaatggtgaacttcttgaggcaatatgtctcaactctatc
aatgagcaacaaggtgctatcgccaccaatcggaagggccttgttttcttcaactggaat
gacaagcaagataacaaaaatttagcagagtatatatgggcaggatctgattggcccttg
gatgggtgggctggttgcgaatctacacctacttcaacttctttttctcctagtgttggt
cttggcagaagaaaaggatcccatcttagttcaggtggaccaactattagtttaggttca
ttggcaaaacctggaagggacttaactggtggtggagcatttggaattccaggttatgct
ggtatcggcgcatctggatttgggtggggggaacctgacgaattcgaagatttcgttgat
cctccagcaacactcgagaacatccattcaagagcattgtctcgccacccatctttgcca
ttgttgctagttgggtcaagcaatactcatgtttatttatgggagtttggcaaagacagt
gccatggctacctatggtgttctccctgctgctaatatcccaccaccttatgcccttgct
tccatatcagctgttcaatttgattattatgggcagcggtttgctactgctgcattagat
ggtacagtttgtacatggcaagttgaggtgggtggaagaagcaatgtgcatcctaccgag
tcatccctgtgctttaacacccacgcatcggatgtcgcatttctgactgcaagtggatca
gttcttgctgcagctggatgcagttcaaatggtgcaaatgttgttatttgggatacattg
gcgccaccatccacttgtcaaacttctattatgtgtcatgaaggaggagttcgttctctt
tctgtgttcgatagaaatataggctgtggatctatctcaccgctgattgtaactggtggg
aaaagtggagatgtaactttgcatgattttcggttcatctctactggaaagactaagcat
cacagaagttccaacgagcatgatgttaaggcatcttcaacttcaatgcatgacactaag
tctggaacttccaacggtgttagcaacagtgggatgatctggcatataccaaaggcgcat
acaggtagtgtcagcagtgtatcaaccatcccaaataccagtttgttcttaactggaagc
aaagatggagatgtgaagctttgggatgccaaaagttctcagctagtcttccattggcaa
aagttgcacgagcggcacaccttttttcaaccaacttctaggggctttggtggtgttgtt
agggctgctgtaacagacatccaagtcttacctaatggttttgtctcgtgcggtggggat
ggttctgtgaaacttgtgcaggtaaaaaatgattttgcagatgtacgcccacattag

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