KEGG   Oryza sativa japonica (Japanese rice): 4326075
Entry
4326075           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4326075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326075
   03012 Translation factors [BR:osa03012]
    4326075
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4326075
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4326075
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4326075
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 nSTAND3 AAA_19 T2SSE AAA_16 ATPase PhoH AAA_30
Other DBs
NCBI-GeneID: 4326075
NCBI-ProteinID: XP_015643188
LinkDB
Position
1:join(1027331..1027834,1028554..1028708,1028788..1028875,1028979..1029224,1029852..1029947,1030785..1030973,1031318..1031477,1031580..1031710,1032470..1032637,1032718..1032990,1033497..1033691,1033862..1034065,1034152..1034221,1034325..1034473,1034691..1034999,1035309..1035368,1035479..1035631,1035709..1035819,1036383..1036865)
AA seq 1247 aa
MLLASCLRGRLRLHRRPRPLIMPSPLFLSRNPNPSPPRSATATGTTILSPPSTSASASMS
TSGVYVPPMRRLRSVIASTNGSLAPPPSAAAQAQPVRAPEWRADGRSLSPPPSPPRPPRR
ATPPPPRQPPPQPEPFRQRSAGYARYAYDDFSEDDSDREMDRTSVSSRGGSTLDNIDEWK
WKLHMLLRNEDEQEVISRERKDRRDFEQLSQLAERMGLYSRQYSRIVVFSKVPLPNYRSD
LDDKRPQREVSIPSGLQREVDALLSDYLARKRTSSGSFPNAAFSRSSSTDSFATDESFLE
QQDNQTSTSAVIERIQRRKSLQLRNQQESWQESHDGQSMMEFRRSLPAYKERQTLLEAIA
QNQVVVVSGETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERG
EKIGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNED
FLLIVLKDLLPRRPELRLVLMSATLNAELFSSYFGGAPMIHIPGFTYPVRSRFLEDILEI
TGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSC
WNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLA
CHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQI
KSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLG
KMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAY
EGWREAERDRNGYDYCWKNFLSVQTLKAIDSLRRQFLFLLRDTGLVDENMTACNKWSRDE
NLVRAVICAGLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKETKIPFPWLVFNEKV
KVNSVFLRDSTAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSEL
DNLIHCKLQNPRMDIQTSEELLSAIRLLVTEDPCNGRFVYGRQEQRSKKAKTMFSAAPMS
HGGGGNGGDNAKNQLQTLLTRAGHDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKL
AEKDAAGEALNWLTGGAPSDSRDPQDMDHMSMLQKPPRRKRHHHRRG
NT seq 3744 nt   +upstreamnt  +downstreamnt
atgctcctggcctcctgcctccggggtcgcctccgcctccaccgccggcctcgcccgctg
atcatgccctccccgctcttcctctcccggaaccctaatccttctcccccacgcagcgcc
actgccactggcaccaccatcctctccccgccctccacctccgcctccgcctccatgagc
acgagcggggtctacgtcccgccgatgcggcgcctccgctccgtcatcgcgtccaccaac
ggcagcctcgctccgccgccgtccgcggccgcgcaggctcagccggtgcgcgcgcccgag
tggcgggcggacgggcgctcgctcagccccccgccgtccccgcctcgaccgccccggcgc
gcgacgcctccccctccacggcagcctcctcctcagccagagcctttccggcagcggagc
gccgggtacgcccggtacgcctacgacgatttctctgaggatgactcggatcgggagatg
gaccgcacctccgtctcgagtaggggtggatccactttagataatattgatgaatggaaa
tggaaactgcacatgcttcttcgtaacgaagatgagcaagaggttatctctagggaaaga
aaggacagacgtgattttgaacaactttcccaactggccgaacgaatgggtttgtacagc
cgtcagtattctaggattgttgtgtttagtaaggttccattgcctaattatagatcagac
cttgatgacaaaagaccacaaagagaggtgtctattccttctggattgcaaagagaagtt
gatgctttgctttcagattatcttgcacggaagagaacaagcagtgggagctttcctaat
gccgctttctcaaggtcaagtagcacagacagttttgcaactgacgaaagcttcttggag
cagcaagataatcagacttcaaccagtgctgtgatagagagaatacaaagaagaaaaagc
ctacagttgcgtaatcaacaggaatcatggcaggaatcacatgatggccaaagcatgatg
gaatttcgtcgcagtcttcctgcttataaagaaaggcaaacattattggaagctatagct
cagaatcaggttgttgtagtttcaggtgaaacaggatgtggtaagacaacacagctacct
cagtacattttagagtctgaaatagatgctgctcgtggtgccacttgcagtattatttgt
actcaaccaagacgaatatcagccatagctgtttctgaaagagttgctgctgaaagaggg
gaaaaaattggtgaatcggttggctacaaagttcggttggaaggaatgaaaggacgggac
acacgccttcttttctgtactactggagttctgttgcggagattgctggtggatagaaat
ttgaaaggtgttacccatgttattgttgatgaaatccatgagcgtggcatgaatgaagat
tttcttcttattgtcctgaaggaccttcttccacgccggcctgagctaagacttgttttg
atgagtgcaacccttaacgctgagttattctcttcatactttggtggagctcccatgata
catatacctggtttcacttatcctgttcggagtcgatttctagaagatattctcgaaatt
actgggcacagattaactccttacaatcaaattgatgactatggtcaagagaaaagttgg
aagatgcaaaagcaagctctaaggaagaggaagagccaaattgcttcggttgtagaagat
acagttcaagctgctgatttaagggactacagtgcacgaactcgtgactcactatcctgt
tggaatcctgattcgattggttttaacttgatagaaaatgtcttatgccatatatgccaa
aaggaaagagctggcgcagttcttgtatttatgactgggtgggatgacatcaatgcactg
aaagagcagctgcaagcaaacccattgcttggagaccctagtaaagttttactgcttgca
tgtcatggttcaatggctagctcagagcagaaactaatatttgatagacctgagcctggt
gtaaggaaaattgttcttgcaaccaatttggctgaaacaagtattactatcaatgatgta
gtttttgtggttgattgtggcaaagcaaaagagacatcttatgatgcattgaacaacact
ccatgtttgcttccaacctggatctccaaggcttctgccagacagagacgaggaagagct
ggtcgagtccaaccaggggagtgttaccatctatatccacaatgcgtgtatgaagcattt
gctgactatcagttgccagaactcctgagaactcctctgcaatccctctgtttgcaaata
aaaagcttgcgccttgggagcatctctgaatttttatccagagctttgcaatcacctgag
tctctatcggtagaaaatgccattgaatatctcaaagtcattggagcgtttgatcgtaat
gaagagttaacaattctaggaaagcacttatccatgcttccagttgagcctaaattgggg
aagatgctgatttttggtgctatttttaattgccttgatcccatattaaccattgtttcg
ggacttagtgtgagagatccattcttgactccatttgacaagaaggatcttgcagagtct
gctaaattgcagttttcatgccgggactatagcgatcaccttgcacttgttcgtgcatac
gaaggatggagagaggctgaaagagatcgcaatggctatgactactgctggaaaaatttt
ctatccgtgcaaaccttgaaagccatagattcccttcggagacaatttctctttcttctc
agggatactgggttggttgatgaaaacatgactgcgtgcaataaatggagccgtgatgaa
aatctagttcgggcggtcatttgtgcaggattatatccaggtgtttcctctgttgtgaac
aaggagaaatcaatttctctcaagacaatggaggatgggcaagtcatgctttactcgagt
tcagtcaatggaaaagaaaccaagattcccttcccctggctggtgttcaatgagaaggtg
aaggtgaattctgtttttctccgggactcaacggctatatctgattctatactgttactc
tttggaggcaacataaaacaagggggcttggatggacatttgaaaatgcttggaggatat
cttgagttcttcatgagtcgtgatcttgcatcaacttacttgagtctcaagagtgaactt
gataatttaatccattgcaagctccaaaacccgaggatggacatccaaaccagtgaagag
cttctgtcagcgattagactgcttgtcactgaggatccatgcaacggtcgtttcgtatat
ggtcgacaagagcaaagatcaaagaaagcaaagacaatgttctctgcagcccccatgagc
catggtggtggtggaaatggaggagacaatgctaagaaccagctccagacccttctcact
agggctgggcatgataacccatcctacaagacgaagcaaatcaagaacagcctcttcagg
tcgaccgtggagttcaatgggatgcagtttgtagggcagccgtgtgccaacaagaagctt
gcggagaaggatgctgcaggagaggcactgaactggctgacaggaggagctccctccgac
tcaagagatccccaagacatggatcacatgtccatgcttcagaaaccaccacgcaggaag
aggcatcatcataggaggggttga

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