Oryza sativa japonica (Japanese rice): 4326190
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Entry
4326190 CDS
T01015
Symbol
OsJ_02174
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4326190 (OsJ_02174)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4326190 (OsJ_02174)
03009 Ribosome biogenesis [BR:
osa03009
]
4326190 (OsJ_02174)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4326190 (OsJ_02174)
Spliceosome [BR:
osa03041
]
Complex A
U1 snRNP components
U1 related factors
4326190 (OsJ_02174)
Complex B
4326190 (OsJ_02174)
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Helicases
4326190 (OsJ_02174)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
4326190
NCBI-ProteinID:
NP_001384877
LinkDB
All DBs
Position
1:join(21092536..21092958,21093081..21093149,21094072..21094341,21094602..21094952,21095119..21095396,21096623..21096967,21097214..21097856)
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AA seq
792 aa
AA seq
DB search
MSAGTAPAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPEDQLPPPP
PLPPPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRDRDRRHDDHRSAPSHHHPLPAAA
AIAADDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQS
WPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILE
EAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYL
VLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSV
DELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFG
ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVH
RIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNR
WATRSDRGGSHSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRS
RSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGS
GSALPDSGHGERKRTPEADPSRNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYS
PAYNGKTSRSVSPGNQVEGNNKAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGEIADDP
RANATVQNGGDN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagggaccgccccggccgcgccgcggtacgcgccggacgacccgtcgctcccc
aagccgtggcgcgggctcgtcgacggcaccaccggctacctctactactggaacccggag
accaacatcacccagtacgagaagccgctgccgcccgaggaccagctcccgccgcccccg
ccgctccccccgccgcctccccgctccggccgaggcgaccgagaccgcgaccgccgcgac
cgctcccgatcccgcaccccgccgcggcgcgaccaccgggaccgcgaccgggaccgcgac
aggcgccacgacgaccacaggtcggcgccttcccaccaccatcctcttccggccgccgcc
gccatcgccgccgatgatccctccaccgaggcgtatcgccaccgccacgagatcaccgtt
gtcggggacaacgtgccagctccgataacttcgtttgagactggtggattcccaccggaa
atcctcaaggagatacaacgtgctggattctcaagtccaacgccaatccaagctcagtca
tggccaattgccttgcagtgtcaagatgttgtagctattgcaaagacaggatctggaaaa
actcttgggtatctacttcctggatttatgcatattaaacgcttgcaaaacaacccaagg
tctggtccaacagtgctagttttggcaccgacaagggagcttgcaactcagattttggaa
gaagctgtgaaatttggcagatcatcaagaatttcttccacgtgtctatatggtggtgct
ccaaaaggcccccagctaagagatttggatagaggggtcgatgtcgttgttgctacacca
ggaaggttgaatgacatcctagaaatgcgaaggataagccttaagcaagtgtcgtacctt
gttctagatgaagctgaccgtatgttggacatgggatttgaaccacaaattcggaagata
gtgaaagaaattcctcctcgtcggcaaaccctcatgtacactgctacttggcctaaggaa
gtccgacgaattgcagaggatcttcttgttcaccctgtccaggtgaccattggaagtgtt
gatgagcttgttgctaatagtgctattactcagaatgtggagctgatcacaccgtccgaa
aagcttcgccgtctggagcaaattttgcgatcccaggattcaggttcgaaggtactaata
ttctgtaccactaagagaatgtgcgaccaacttgcaaggacacttactaggcaatttgga
gcttctgccattcatggtgataagtcccaaagtgaaagagagaaggtcctgagccatttt
agatctgggcgatctcctattttggttgcaacagatgttgctgcacgaggcttagacatc
aaagatatcagggttgtgatcaattatgatttccccactggcattgaagattatgttcac
cggattggcaggactggaagggctggtgccactggtgtggcctatacgtttttctgtgac
caggattcaaaatatgctgctgatcttattaaaattctggaaggcgcaaaccaacgtgtg
cctcgtgacttggcggacatggcctctcggggtgggcgtggtggtaggaagcgtaaccgg
tgggcaacccgctctgataggggtggttcgcattctgaactggattctaggtatggtgga
agagatggtctgtcagggtcttctggcagattggatagtagtcgcagtagtcgcaggcat
gactatggtgatgatggacggtctcgcaggtctgggagaggtcgcagtaggagccgtagc
agaagtgacagtgataggtatagccgaagtcctaagaggtcacgccgtcatagccgtagc
aggaccaggagtcggagccgaagcaggagcaggagctacactaggaaccgtcgtgctagc
cgcagcaggagccgtagccctggtgctagccgtaggcatgaaagaagcgctactggctct
gggtctgcactgccagactctgggcacggtgagcgcaaaagaacaccagaagctgaccca
tcaagaaaccatacaaaccactcagacccgaaagatgaccgacacccagaggatgggaag
gtgggaaaggttgatctcgatcggtcgcctactccacaagacaagtctggcccatatagt
cctgcttacaatggaaaaaccagtcgctcagtgagccctggtaatcaggtggaaggaaac
aacaaagctgcggaggtttctaagaatcctgatccttcatcgccaccccatcatggtaag
accagggaggacgaagaggaaggtatgatagatgaagatggagagatagctgatgatcct
cgggcaaatgcaaccgtgcagaatggcggtgataattga
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