KEGG T01015: 4326192

Oryza sativa japonica (Japanese rice): 4326192

Entry

4326192           CDS       T01015

Symbol

AIP1, BAT1

Name

(RefSeq) dEAD-box ATP-dependent RNA helicase 56

K12812

ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03013

Nucleocytoplasmic transport

osa03015

mRNA surveillance pathway

osa03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4326192 (AIP1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    4326192 (AIP1)
   03015 mRNA surveillance pathway
    4326192 (AIP1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326192 (AIP1)
   03041 Spliceosome [BR:osa03041]
    4326192 (AIP1)
Enzymes [BR:osa01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4326192 (AIP1)
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4326192 (AIP1)
Spliceosome [BR:osa03041]
Complex C
  Other components
   EJC/TREX
    4326192 (AIP1)
Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4326192 (AIP1)

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 DNA_repr_REX1B

Other DBs

NCBI-GeneID:

4326192

NCBI-ProteinID:

NP_001388560

UniProt:

Q0JM17

LinkDB

Position

1:join(21111015..21111142,21111248..21111348,21112979..21113151,21113233..21113464,21113611..21113729,21114348..21114404,21114483..21114667,21116120..21116264,21116331..21116414,21116502..21116565,21116667..21116677)

AA seq 432 aa
MAEAEVKDNEVYEEDLVDYEEEVENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKP
ELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQV
GALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPG
RILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKE
IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFV
KSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIE
RVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKEL
PEQIDTSTYMPS

NT seq 1299 nt +upstreamnt +downstreamnt
atggccgaagccgaggttaaggacaacgaggtttacgaggaggatctcgtcgactacgag
gaggaggtggagaacggcaccgacggtggcgccaacgccgccaacgcctccgccgatgtc
gtcaagaaggggtacgtggggatccacagctcggggttcagagacttcctgctcaagccg
gagctgcttcgcgccatccaggactgcgggtttgagcacccttccgaagtgcaacacgaa
tgcatcccacaagccattcttggaatggatgtcatctgccaagcaaaatctgggatgggg
aagactgctgtttttgttctctcaagtcttcagcaaattgatcctgttgctggtcaagtt
ggtgcacttgtgctatgtcacacaagggagctagcttaccagatttgccatgaatttgag
aggtttagcaagtaccttcctgaggtaaaagttgcggtcttctatggtggtgttcacata
aaaaaacacaaggatctgttgaagaatgactgccctcatattgtggttggaacacctgga
aggatactagctctagctagagagaaggatctttccttgaagaatgtgaggcatttcatt
cttgatgaatgtgacaagatgctcgattcacttgacatgcgtagagatgtgcaggagatc
ttcaaaatgacaccccatgataagcaagtgatgatgttttcagcgacccttagcaaggag
atccgcccagtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgag
gctaaactgacccttcatgggctagttcagcactatattaaactaagtgaggcggagaag
aaccggaaattgaatgatctcttagatgcactggacttcaatcaagttgtgatatttgtt
aaaagtgttagtagagctgcagaactgaacaagctgctttgtgaatgcaactttcctgcg
atctccatacattctggaatgacacaggaggagaggcttacccggtacaagaacttcaag
gaaggacacaagaggattcttgtggctactgatttagttggcaggggaattgatattgaa
cgtgtcaacattgtcataaactatgacatgcccgattctgctgattcgtatctacacagg
gttggaagggctgggcgttttggaaccaaaggacttgcaataacatttgtttcctctgcc
tctgactctgatgttcttaatcaagtgcaagaaagattcgaggttgacataaaggagctt
cctgagcagattgatacttcgacatatatgccttcttaa

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