KEGG   Oryza sativa japonica (Japanese rice): 4326227
Entry
4326227           CDS       T01015                                 
Symbol
OsJ_01157, P0462H08.1
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4326227 (OsJ_01157)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4326227 (OsJ_01157)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326227 (OsJ_01157)
   03041 Spliceosome [BR:osa03041]
    4326227 (OsJ_01157)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4326227 (OsJ_01157)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4326227 (OsJ_01157)
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4326227 (OsJ_01157)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4326227
NCBI-ProteinID: NP_001388564
LinkDB
Position
1:complement(join(8583000..8583022,8583119..8583274,8583898..8583940,8585485..8585562,8585833..8585931,8586029..8586070,8586163..8586165))
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
GSKGGGGRGRGGIGGKGGIKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccgctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagcttaag
aacggcgagacgtacaacgggcacttggtgaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctcaaaggatggtgataagttttggaggatgccagaatgttac
atccgtgggaacaccatcaagtatcttcgggttcctgatgaggtgattgacaaggtccag
gaagagacttcaaagagcagatcagataggaggccaccaggtgtaggccgcggaagagga
agaggtgatataggtactaagcctggaggcagaggcattgggcgtggccaggatgatggt
ggcagcaaaggcggtggtggccgtggaaggggaggaattggaggtaaaggtggcatcaaa
ggtgggggccgcggacgtgggtga

DBGET integrated database retrieval system