Oryza sativa japonica (Japanese rice) (RefSeq): 4326580
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Entry
4326580 CDS
T01015
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4326580
09122 Translation
03013 Nucleocytoplasmic transport
4326580
03015 mRNA surveillance pathway
4326580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4326580
03041 Spliceosome [BR:
osa03041
]
4326580
03009 Ribosome biogenesis [BR:
osa03009
]
4326580
03012 Translation factors [BR:
osa03012
]
4326580
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4326580
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4326580
mRNA cycle factors
Stress granule specific factors
4326580
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4326580
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
90S particles
Helicases
4326580
Translation factors [BR:
osa03012
]
Eukaryotic type
Initiation factors
eIF-4
4326580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
AAA
TniB
Motif
Other DBs
NCBI-GeneID:
4326580
NCBI-ProteinID:
XP_015621327
UniProt:
Q5VNM3
LinkDB
All DBs
Position
1:25636976..25640503
Genome browser
AA seq
404 aa
AA seq
DB search
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQR
AVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVML
AIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD
EADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELT
LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAM
HGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaccacgtcgcggcgcggcccgggcgccatggacgacgagaacctcacc
ttcgagacctccccgggggtcgaggtcatcagcagcttcgaccagatggggatccgcgac
gacctcctccgcggcatctacgcctacggcttcgagaagccctccgccatccagcagcgc
gccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcccagtccgggaccggc
aagacctccatgatctcgctctccgtctgccagatcgtagacaccgccgtccgtgaggtg
caggctttaatactgtcaccaactagagaacttgctgcacaaacagaaagagttatgctg
gctatcggtgacttcatcaatatccaagtgcatgcttgtattggtggcaaaagtattggt
gaggatattagaaagcttgagcacggagtgcatgtggtgtcaggaacacctggcagagtc
tgtgatatgatcaagagaaggaccttgcgtacaagagccattaagctcctaattctggat
gaagctgatgagatgttgggcagaggctttaaggatcagatatatgatgtgtacagatac
ctccctccagaactccaggtttgcttgatctccgcaactctgcctcacgagatcttggaa
atgaccagcaagttcatgactgatccagttcggatccttgtgaagcgtgatgaattgact
ctagagggcatcaaacaattctttgttgctgttgagaaagaagaatggaagtttgacacg
ctttgtgatctttatgatacactgacaatcacccaagctgtcattttctgcaacacaaag
agaaaggttgattggcttacggaaagaatgcgcagcaataacttcacagtatcagctatg
catggcgacatgcctcaaaaggaaagggatgccattatgggtgaattcaggtctggtgca
acccgtgttctaatcacgacagatgtgtgggctcgaggcctcgatgttcagcaggtctct
cttgtcataaattatgatctcccaaataatcgtgaactttacatccatcgcattggtcgc
tctggacgttttggtcgcaagggtgtggccatcaattttgtcaaaaaggaagacatccgt
atcctgagagatatcgagcagtactacagcacgcagattgatgaaatgccaatgaatgtt
gctgatctaatttga
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