KEGG T01015: 4326580

Oryza sativa japonica (Japanese rice): 4326580

Entry

4326580           CDS       T01015

Symbol

EIF4A3A, eIF4A-III, EIF4A3, OsJ_02769, OsRH2, RH2

Name

(RefSeq) eukaryotic initiation factor 4A-III homolog A

K13025

ATP-dependent RNA helicase [EC:5.6.2.7]

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03013

Nucleocytoplasmic transport

osa03015

mRNA surveillance pathway

osa03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4326580 (EIF4A3A)
  09122 Translation
   03013 Nucleocytoplasmic transport
    4326580 (EIF4A3A)
   03015 mRNA surveillance pathway
    4326580 (EIF4A3A)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326580 (EIF4A3A)
   03041 Spliceosome [BR:osa03041]
    4326580 (EIF4A3A)
   03009 Ribosome biogenesis [BR:osa03009]
    4326580 (EIF4A3A)
   03012 Translation factors [BR:osa03012]
    4326580 (EIF4A3A)
Enzymes [BR:osa01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4326580 (EIF4A3A)
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4326580 (EIF4A3A)
   mRNA cycle factors
    Stress granule specific factors
     4326580 (EIF4A3A)
Spliceosome [BR:osa03041]
Complex C
  Other components
   EJC/TREX
    4326580 (EIF4A3A)
Ribosome biogenesis [BR:osa03009]
Eukaryotic type
  90S particles
   Helicases
    4326580 (EIF4A3A)
Translation factors [BR:osa03012]
Eukaryotic type
  Initiation factors
   eIF-4
    4326580 (EIF4A3A)

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 AAA_22 AAA

Other DBs

NCBI-GeneID:

4326580

NCBI-ProteinID:

NP_001384966

UniProt:

Q5VNM3

LinkDB

Position

1:join(26218458..26218753,26219038..26219278,26219359..26219439,26219839..26219946,26220059..26220178,26220536..26220703,26220794..26220880,26221532..26221645)

AA seq 404 aa
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQR
AVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVML
AIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD
EADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELT
LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAM
HGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI

NT seq 1215 nt +upstreamnt +downstreamnt
atggcggcggccaccacgtcgcggcgcggcccgggcgccatggacgacgagaacctcacc
ttcgagacctccccgggggtcgaggtcatcagcagcttcgaccagatggggatccgcgac
gacctcctccgcggcatctacgcctacggcttcgagaagccctccgccatccagcagcgc
gccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcccagtccgggaccggc
aagacctccatgatctcgctctccgtctgccagatcgtagacaccgccgtccgtgaggtg
caggctttaatactgtcaccaactagagaacttgctgcacaaacagaaagagttatgctg
gctatcggtgacttcatcaatatccaagtgcatgcttgtattggtggcaaaagtattggt
gaggatattagaaagcttgagcacggagtgcatgtggtgtcaggaacacctggcagagtc
tgtgatatgatcaagagaaggaccttgcgtacaagagccattaagctcctaattctggat
gaagctgatgagatgttgggcagaggctttaaggatcagatatatgatgtgtacagatac
ctccctccagaactccaggtttgcttgatctccgcaactctgcctcacgagatcttggaa
atgaccagcaagttcatgactgatccagttcggatccttgtgaagcgtgatgaattgact
ctagagggcatcaaacaattctttgttgctgttgagaaagaagaatggaagtttgacacg
ctttgtgatctttatgatacactgacaatcacccaagctgtcattttctgcaacacaaag
agaaaggttgattggcttacggaaagaatgcgcagcaataacttcacagtatcagctatg
catggcgacatgcctcaaaaggaaagggatgccattatgggtgaattcaggtctggtgca
acccgtgttctaatcacgacagatgtgtgggctcgaggcctcgatgttcagcaggtctct
cttgtcataaattatgatctcccaaataatcgtgaactttacatccatcgcattggtcgc
tctggacgttttggtcgcaagggtgtggccatcaattttgtcaaaaaggaagacatccgt
atcctgagagatatcgagcagtactacagcacgcagattgatgaaatgccaatgaatgtt
gctgatctaatttga

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