Oryza sativa japonica (Japanese rice): 4326622
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Entry
4326622 CDS
T01015
Name
(RefSeq) protein SEH1
KO
K14299
nucleoporin SEH1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4326622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4326622
04131 Membrane trafficking [BR:
osa04131
]
4326622
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4326622
Membrane trafficking [BR:
osa04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
4326622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_WDHD1_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR19_1st
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
WDR55
Beta-prop_IFT140_1st
Beta-prop_EML
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
4326622
NCBI-ProteinID:
XP_015621834
UniProt:
Q0JL67
Q5ZBF5
LinkDB
All DBs
Position
1:complement(join(25282343..25282480,25282661..25282787,25283552..25283664,25284423..25284578,25284746..25284823,25285276..25285376,25286399..25286510,25287050..25287199))
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AA seq
324 aa
AA seq
DB search
MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQSQPSPSSKWQAHKHAILNIV
WLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLK
MVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQ
QASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYE
IIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGM
VKLWQANLNGVWHEQAVLDCNVSH
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcaggtggcggagctgggggccggcgcggcgtgcgtaggctggaaccac
tgcggccgccgcctcgccgccggcgccgtcgacggcttcgtctccgtctacgactcccag
tcccagccgtcgccttcctccaagtggcaggcccacaagcatgcgatcctgaatatcgtg
tggcttcctccggactatggggatgctatagcttgtgtttgtgctgatgggacgctatct
ttgtgggaggaggtcagtgaagatgatcaacttccaacctggaggaaatgtaaagtattt
gagagtggcaattctcacatactacacgtacagtttggattacaactgtctagtctaaaa
atggttactgcatactcagatggccaagtgaaggtttatgagctcttggactcgttggaa
ttagacaagtggcagcttcaggcggagttccagaacattacagatcctgtttcccgatct
gggaagccagcatgtacttctgcatcaattgcatggagtccaagaagaggtgaaagtcag
caggctagttttgctattggtttcaattcagactctccaaatttcaactcttgtaagatt
tgggagttcgaagaagctcaccagcgttggctcccccttgttgagcttggctcacctcag
gataagggggatatagtgcatgctgtagcatgggctcctaacatcggcagaccatatgag
atcatagcagttgcgacatgtaaaggaatcgcaatctggcatataggcttaagcgctgaa
tctgacggcagcctgtcaactgagaatgtggctgtactttctggccatgatggggaggtc
ctgcaactggaatgggacatgggcggtatgacactcgcatcgaccggaggtgatggcatg
gttaagctatggcaggctaacctgaatggagtttggcatgaacaagctgtgcttgactgc
aatgtgtctcactag
DBGET
integrated database retrieval system
