Oryza sativa japonica (Japanese rice): 4327511
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Entry
4327511 CDS
T01015
Name
(RefSeq) pumilio homolog 1
KO
K17943
pumilio RNA-binding family
Organism
osa
Oryza sativa japonica (Japanese rice)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NABP
PUF
PUF_NOP9
DUF445
Motif
Other DBs
NCBI-GeneID:
4327511
NCBI-ProteinID:
XP_015611225
UniProt:
Q0JHT2
A0A0P0VA86
LinkDB
All DBs
Position
1:join(36904514..36905173,36906056..36907596,36908183..36908324,36908456..36908563,36908648..36908860,36908947..36909057,36909890..36910084,36910708..36910882,36911023..36911060)
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AA seq
1060 aa
AA seq
DB search
MISASAVAMRGEMGGGGGGGDEGELEDELDALLGTGGAGARRRGEDAGERERELNMFRSG
SAPPTIEGSLNAISGLLRGGGEAAVTVAAIPDAETLNGHGGLLSEDELRADPAYLSYYYS
HGNLNPRLPPPVLSKEDWRSTQRLKAGVVGGIGDGRKVSPEETGHEPTVGRPVFSQNVGF
DQEEAARNDVGGAAEWVDGGGDGLIGLSLGRQRSFADILQDNIGRRTPASEHPSRAVSRN
SFLDNQELLNSADSQYSMHNDILEAQRAVGNVQNVSGLPSINASASQTFASVLGSSISRN
ATPDSHYVPRVPSPGLPPVGVRINSNEKKLNCSSSFNTASSKAVEPDDILAAISNMNMSK
DGTLGDSNSISQSKFQSEISDHQNISLDPKALQVNKNQHSLMLEADTDYLGIPPISQPSN
PSFSDINKNVSGLANIRNSTNTRIDGHAEMQRSSTLSTRSYQKSPTSSNASPGGSPAQHQ
NIDNINSAFLNYGLGGYPLSPGLPSMMMNCMGSGNMPPLFESAAAASAIASFGADSRNLG
NNILSSPTLSLSDVHNLGRTGNQTATGLLSPLSDPFYVQYLKATQYAAQGTANCSDPSLE
RGFMGSQYGDLTAVQKAYIEALLQQQKQYGMPLGKSTTSNHGYYGNLAFGMGMAYPGSPL
GSPVASPSGPGSPLRLSERNMRFPSNLRNLGGWNSDPSGYMNDNFPSSLLDEFKSNKARS
FELAEIASHVVEFSADQYGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQ
KFFEHGSAAQRRELADQLFGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIMR
CVRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEHCTDPKTQ
EIVMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVV
EKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQRELILSR
VKVHLSALKKYTYGKHIVARVEKLVAAGERRIGLQAQYPS
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgctagcgctgtggcgatgcgtggggagatgggtggcggtggcggcggcggc
gatgagggagagctggaggacgagcttgatgccctcctcggaaccggtggcgctggcgcg
cgtcggcgaggtgaggacgcgggagagagggaacgggagctcaacatgttcaggagcggg
tcggcgccgccgactatagagggttcgctgaacgccatcagcgggctgctccgcggcggt
ggagaggcagccgttaccgttgcagcgattcccgacgctgagacgttgaacgggcatggt
ggtctcctctcggaggatgagctccgggctgacccggcctatctatcctactactactcg
catggcaatctgaacccaaggttgccaccgccggtgctatccaaggaggactggcggtcc
acacagagactgaaggcgggggtggttggaggaattggtgacggaaggaaggtatcgccg
gaggagactggacatgagccgacggtggggaggcctgtgttctcgcagaatgttggtttt
gatcaggaggaggctgcaaggaatgatgtaggtggtgctgcagagtgggtggatggtgga
ggtgatgggctgattggtttgtcgcttgggcggcagcgcagctttgctgatatccttcag
gacaatattggccgcagaactcctgcttcagagcatccctctcgtgcagttagtcgcaat
tcttttcttgacaatcaggaactactaaattctgctgatagccagtactccatgcataat
gatattctggaagcacaacgtgctgtcggaaatgtgcaaaatgtcagtggccttcccagt
attaatgcatccgcatctcaaacttttgcatctgttctgggttcatctatttcaaggaat
gccacaccagattctcattatgtccctagggtccctagtcctggccttccacctgtcggt
gttaggattaattctaatgagaagaagctgaattgctcatcatcattcaacactgcatct
tcaaaagcagttgagcctgatgatattttagctgcaatatcaaacatgaacatgtcaaaa
gatggtactttgggtgacagtaacagcattagtcaatcaaagttccaaagtgagataagt
gaccaccagaatatttctcttgatccaaaagctctccaagttaataagaatcagcattcg
ctgatgttggaagctgatactgattatttgggtataccaccaatttcacaaccttcaaat
ccttccttttctgatattaacaagaatgtctcaggtttagcgaacataagaaattctact
aacacacgtatagatggacacgcggagatgcaaaggtcttctactttgtctactcggtca
tatcagaagtccccaacatcttccaatgcgagcccaggtggttctcctgctcaacaccag
aatattgacaatataaattcagcctttttgaactatggactcggtgggtatccactcagc
ccgggtttgccttctatgatgatgaactgtatgggctctggcaatatgcctcctttgttc
gaaagtgcagctgctgcatctgctatagcttcattcggggcagattcgagaaaccttggt
aacaatattttgtcgtcacctaccttaagtctatctgatgtgcataaccttggcagaact
ggtaaccaaacagccacaggtcttttgtcgcctctttctgatccattttatgtccagtac
ttgaaggcaactcaatatgcagcacaaggaactgccaactgcagtgatccttccttggaa
agaggtttcatgggtagtcaatatggtgatttaactgctgttcagaaagcttatattgaa
gctttgcttcagcagcagaaacaatatggaatgccacttggtaagtcaaccacgtcaaac
catggctattatggcaatttggcttttggcatgggcatggcataccctggaagccctttg
ggaagtcctgttgcttctccatctggtcctggcagtccacttagactcagtgagcggaat
atgagatttccttctaacttgagaaacttgggtggctggaattctgatccaagtggctat
atgaatgataacttcccatcttcactattggatgaattcaaaagtaataaggccagaagt
tttgaacttgctgagattgccagtcatgtggttgagttcagcgctgaccaatacggaagc
cgtttcatacagcaaaaacttgaaaccgcaacagttgaggaaaaagacatggtttttaag
gagatcatgcctcaggctctctcgttgatgaccgatgtatttgggaactacgtggtgcag
aagttctttgagcacgggagtgcagcacagcgtagggagctggctgatcaactatttgga
catgtgttagctctcagccttcagatgtatggatgccgagttatccaaaaggcaatagaa
gtggttgacctggaccagaagacaaaaatggttactgagcttgatggccatatcatgaga
tgcgtgcgtgatcaaaatggaaaccatgttatccaaaaatgtattgaatgtgtaccggaa
gattcgattcagtttatcatctcaacattctatggtcaagttgttccattatccactcat
ccctatggctgcagagtcatacagagagtactggagcattgcactgatccaaaaacacag
gaaatagtcatggatgaaatattgcaatctgtgtgcatgttggcacaagatcaatatgga
aattatgttgttcagcatgttttggagcacgggaagcctcatgagcgatctgtcattatt
gaaaaactagctgggcagatcattcagatgagccaacagaaatttgcctcaaatgttgtt
gagaagtgtttaacatttggcggacctgcagagcgggaagttcttataaatgaaatgctc
ggaactactgacgagaatgagcctcttcaggccatgatgaaggatcagtttggtaactat
gttgtacagaaagtactggagacttgtgatgatcagcagcgtgagttgatcctgtcacga
gtaaaggttcatttaagtgcactgaagaaatatacatatgggaagcacatagttgcccgg
gtagaaaaacttgttgctgccggtgagaggaggattgggcttcaggcacaatatccttca
taa
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integrated database retrieval system
