KEGG   Oryza sativa japonica (Japanese rice): 4327549
Entry
4327549           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4327549
  09124 Replication and repair
   03420 Nucleotide excision repair
    4327549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4327549
   03400 DNA repair and recombination proteins [BR:osa03400]
    4327549
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4327549
  RNA polymerase III system
   RNA polymerase III
     4327549
  RNA polymerase I system
   RNA polymerase I
     4327549
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4327549
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat NA-iREase1 CTLH
Other DBs
NCBI-GeneID: 4327549
NCBI-ProteinID: XP_015649715
UniProt: Q5VQW7 A0A979HJL6
LinkDB
Position
1:complement(join(34770849..34770974,34771756..34771869,34772000..34772179,34772922..34773134))
AA seq 210 aa
MSAGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLI
NKYKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQE
LEPKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIA
RYYGLRRGQVVKIIRPSETAGRYVTYRYVV
NT seq 633 nt   +upstreamnt  +downstreamnt
atgtcggcggggctcgtgacggaggaggtgatggtggggcggctggtgcggatccggcgg
acggtgatgcagatgctgcgggacagagggtacctggtggtggagcacgagctcgccatg
ggccgccgcgacttcctccgcaagtacggcgagtccttccaccgcgaggacctcctcatc
aacaagtacaagaagaacgatccctccgaccagatatacgttttcttccctaacgatgac
aaggtgggaatgaaacacataaagaagtacgtcgagatgatgaaagctgagaacgtctcc
agagcggtattggttcttcaacagaacctcactccatttgcaaggtcatttcttcaagaa
ttagagccaaagatccacttggaaattttccaggaagccgaattgcttataaatatcaag
gaacatgttctcgttcctgaacatcaagtgcttaacaatgaggaaaagaagacattattg
gagcggtacactctaaaggaaactcagcttccaagaatacaaattacggaccctattgca
aggtactatggcctcagacgaggacaggttgtgaagatcatcaggcccagcgagacagcc
ggcagatatgttacatatcgttatgttgtataa

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