Oryza sativa japonica (Japanese rice): 4327550
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Entry
4327550 CDS
T01015
Symbol
OSTB-16, R1623, RTUB-1, TUB4, tubB, TUBB4
Name
(RefSeq) tubulin beta-4 chain
KO
K07375
tubulin beta
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04145
Phagosome
osa04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
4327550 (OSTB-16)
09142 Cell motility
04814 Motor proteins
4327550 (OSTB-16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
osa03036
]
4327550 (OSTB-16)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
osa04812
]
4327550 (OSTB-16)
04147 Exosome [BR:
osa04147
]
4327550 (OSTB-16)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Other tubulins
4327550 (OSTB-16)
Cytoskeleton proteins [BR:
osa04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulins
4327550 (OSTB-16)
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
4327550 (OSTB-16)
Exosomal proteins of colorectal cancer cells
4327550 (OSTB-16)
Exosomal proteins of bladder cancer cells
4327550 (OSTB-16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tubulin
Tubulin_C
Tubulin_2
Tubulin_3
Misat_Tub_SegII
Motif
Other DBs
NCBI-GeneID:
4327550
NCBI-ProteinID:
NP_001393281
LinkDB
All DBs
Position
1:join(34774741..34774880,34775764..34776164,34776872..34777141,34777554..34778233)
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AA seq
496 aa
AA seq
DB search
MPAAGCAAYGYLMHAPFGLTLPGLSTHPSISRSLAADRIAWLDHHNSAKMREILHIQGGQ
CGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPG
TMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ
LVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLR
KLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYL
TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNS
TSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD
EEGEYEDEEQQEADDM
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgctggctgcgccgcctacggctatttaatgcacgctccgttcggcctcact
ctccccggcctctccacccacccctcgatctctcgctcgctcgccgccgatcggatcgcg
tggttggatcatcacaactctgcaaagatgagagagatcctgcacatccaaggcgggcaa
tgtggcaaccagatcggtgccaaattctgggaggtggtgtgtgatgagcatggcattgac
cctaccgggcggtacacaggcaactcagatctgcagttggagcgtgtcaatgtgtactac
aatgaggcctcctgcggtcgctttgtgcctcgtgctgttctcatggaccttgagcctggt
actatggacagtgtccgcactggaccctatggccagatcttccgccctgacaactttgtg
ttcgggcaatctggtgctggtaacaactgggccaagggacactacactgagggtgccgag
ctaattgattctgttttagatgttgtgaggaaggaggctgagaactgtgactgcctgcaa
ggattccaagtatgccactctcttggtggtggtactggatctggtatgggtacacttttg
atatcaaagatcagggaggagtaccctgaccgcatgatgctgacattctcagttttcccc
tcaccaaaagtatctgatactgtggttgagccatacaatgctacactctcagtccatcag
ttggttgagaatgctgatgagtgtatggttcttgataatgaggctctctacgacatttgc
ttcaggactctcaagctgaccacacctagctttggggatttgaaccatttgatttctgcc
accatgagtggagtcacatgctgcctaaggttccctggtcagttgaactctgacctccgt
aagctggcagtgaaccttatcccctttccccgtctccacttcttcatggtcggattcgcc
ccgctgacatcacgtggctcccagcagtaccgtgcccttactgttcctgagctcacacag
cagatgtgggatgccaagaacatgatgtgcgctgctgatcctcgccatggccgttacctc
accgcctctgccatgttccgtggaaagatgagcaccaaggaggttgatgagcagatgatc
aatgtccagaacaagaactcatcctacttcgtcgagtggatccccaacaatgtgaagtcc
agtgtctgtgacattccaccgagaggcctctccatggcatcgaccttcattggcaactca
acatccatccaggagatgttccggagggtgagcgagcagttcactgctatgttcaggagg
aaggctttcttgcactggtacactggcgaaggcatggacgagatggagttcaccgaggca
gagagcaacatgaacgaccttgtctctgagtaccagcagtaccaggatgccaccgccgat
gaggagggcgagtacgaggacgaggagcagcaggaggctgacgacatgtaa
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integrated database retrieval system
