Oryza sativa japonica (Japanese rice): 4327592
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Entry
4327592 CDS
T01015
Name
(RefSeq) vacuolar protein sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
4327592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4327592
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
osa04147
]
4327592
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
4327592
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
4327592
Exosomal proteins of colorectal cancer cells
4327592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Flagellin_N
DUF5111
Vps36_ESCRT-II
Dynamin-like_hel_bact
Motif
Other DBs
NCBI-GeneID:
4327592
NCBI-ProteinID:
NP_001411170
LinkDB
All DBs
Position
1:complement(join(35191283..35191340,35191534..35191618,35191704..35191839,35192097..35192166,35192276..35192333,35192418..35192511,35193024..35193224,35193460..35194101))
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AA seq
447 aa
AA seq
DB search
MSAAAADWLPAADVTAAGRPVLTAGEVERHLVAQGDVEPEESPRLGPLRARLLVLTSHRL
IFLHEPSRSARALPLAAVVHAYPPHRKHGHNPLRSIFSSSSSSSSSHHPRVRLQISLPPS
RSEVVAVVVSKGEADVFYGRLLEAVRARAWEVVAAVAAAPAGGSSAAQGAPAEEDLAIRM
PVVGVSGILRMEQEAWESAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTNSSAQSN
SNDEEMGSKQDMQDWLLSVGIVSPVTKETAGALYHQQLSRQLADYIRTPLEKAGGMMALV
DVYCLYNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARI
SSLAQKEDALQKGISPSDAAFTLGIAPALAKEHLLNAESIGILCRDVSPDGLRFYINLFN
EIDPQNMYMPKTHGVYHTWISVTAASQ
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgcggcggccgactggctcccggccgcggacgtgacggcggcggggcggccg
gtgctgaccgcgggggaggtcgagcgccacctcgtcgcgcagggggacgtggagcccgag
gagagcccccgcctcggccccctccgcgcccgcctcctcgtcctcacctcccaccgcctc
atcttcctccacgagccctcccgctccgcgcgcgccctcccgctcgccgccgtcgtccac
gcctacccgccccaccgcaagcacggccacaaccccctccgctccatcttctcctcctcc
tcctcgtcctcctcgtcgcaccacccgcgcgtccgcctccagatctccctgcccccgtcg
cgatcggaggtcgtcgccgtcgtcgtcagcaagggggaggccgacgtgttctacgggagg
ctgctcgaggccgtccgcgcgagggcgtgggaggtggtcgccgccgtggcggctgccccc
gcgggcggctcctcggcggcgcagggggcccccgcggaggaggatctcgccatcaggatg
cccgtggttggggtgtccgggatcctgcggatggagcaggaggcgtgggagagcgcgggg
cagaatctgcaggatgccttccaggatctcaacgccctcatgagcaaagctaaggaaatg
atggagttagcggagaaaatgaggcaaaagctattgacgaactcatcagcccaatccaat
tccaatgatgaagagatgggatctaagcaagacatgcaggattggctattgagtgttgga
atcgtgtcccctgtgacgaaagaaaccgctggtgctctgtaccaccagcagctgtcacgc
cagttggctgactatattagaacaccactagagaaagcaggtggtatgatggcactagtt
gatgtctattgtctctacaaccgtgcaagagggacagagttgatctcaccagaggatctt
ctgcaagcctgttccctttgggagaaatttgacgtcccagtcatgctcaggaaatttgac
agtggagtgaaggtgatccagaccaagacgcatagtgatgatgaggtatttgcgagaatc
tcatcacttgcacaaaaggaggatgcccttcagaagggaataagccccagcgatgctgca
tttacacttgggattgcacctgctttagcgaaggagcatcttctaaatgcagaaagcatt
ggtatcctttgcagggatgtcagtccagatgggttgcgcttctacatcaatctatttaat
gaaattgatccccaaaatatgtatatgccaaaaactcatggagtataccacacatggata
tctgtcacggcagcatcacagtga
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