Oryza sativa japonica (Japanese rice): 4327645
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Entry
4327645 CDS
T01015
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 14 isoform 1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4327645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4327645
03009 Ribosome biogenesis [BR:
osa03009
]
4327645
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4327645
Spliceosome [BR:
osa03041
]
Complex A
U1 snRNP components
U1 related factors
4327645
Complex B
4327645
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Helicases
4327645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
PepSY_TM
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
4327645
NCBI-ProteinID:
NP_001396153
LinkDB
All DBs
Position
1:complement(join(3722885..3723020,3723465..3723509,3723605..3723661,3723735..3723791,3723864..3724214,3724361..3724638,3724715..3725065,3725154..3725423,3725658..3725879,3725970..3726080,3726279..3726359,3726601..3726690,3726808..3727038))
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AA seq
759 aa
AA seq
DB search
MASAAAAAATARGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSS
PPAQQPPERPRNSDPAESQAQAGASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNV
PFTEQNTRSNPSSQPCSAAGVYPAQNVFSEAASGDRTSPEAYRAKHEITIVGNEAPAPFM
TFQSTGFPPEILREVSAHNLHDYLMHFLVSFSKEIRRSLCVHTTYVITTLDVHLSRLFKS
TIYVKVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNS
RDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVAT
PGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPK
EVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKII
IFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLD
IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQS
VSQQLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRSTDNYNSGYGSQSGNGSSFH
SSFHNSNSGNQFGDTSGFQTSFHNSSSNNQTSDNPSFHASSNNDQPGDGLSFHARFYSSS
RGSDQSRTNNAGFRDRSRSPPSNRNHEDPGSKAVGVSNW
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggcggcggcggcggcgacggcgagggggccgcggtacgcgccgccagat
ccgacgctgcccaagccgtggagggggctcatcgacggcaacaccgggtacctctacttc
tggaacccggagaccaaggccgtgcagtacgaccgccccacggcgccgccgccctcctcc
cccccggcgcagcagcctccggagaggcctaggaacagcgatcctgctgagtcgcaggcg
caggctggagcgagccgaacgcagaatgctgctcctgctgatgatagggcaaggaatgat
catttgaatgatcatttcgagcggcgcacggaagcggcgggaagtcatgcgcagaacgtg
cctttcactgagcaaaatactaggagcaacccttcttcgcagccgtgctctgcagctgga
gtataccctgcacagaatgtattttcagaggctgccagtggagaccgcacctcaccagaa
gcgtatcgtgctaagcacgagatcactattgtcggaaatgaggctccagctccattcatg
acatttcagtccacaggtttccctccagagattctaagggaggtaagtgcacacaattta
catgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgc
gttcatactacgtatgtgataactacgctggatgttcatctcagcaggctcttcaagtca
acaatctatgtcaaggtacagcaagcgggattctctgcaccaactcctatccaagctcaa
tcatggccaattgctcttaggaatcgtgatattgtagctgtggcgaagacaggttccgga
aaaacactgggttatctcattccagggtttatccttcttaagcgccttcaacataattca
agggatggtccaacggtattagtgctttctccaacaagggaattggcaacacaaatccaa
gatgaagcgaaaaagtttgggagatcgtcaagaatatcgtctgtttgtttatatggaggt
gctcctaaaggtcctcagctaagagatctagagcgtggtgcagacattgtggttgcaact
cctggaagattgaatgacattttagaaatgcgaagagtgagcctacatcaagtatcttat
cttgttcttgatgaggctgaccgcatgcttgatatgggttttgagccacaaataagaaaa
attgtgaaacaagtacaacccaaacgacagactcttatgttcactgccacttggccaaaa
gaggtgaggaaaatagcctcagatttgctgtccaatccagtccaagttaacattgggaac
actgatcaactggttgccaataagtcaatcactcagtatgtggatgttatcacacctccg
gagaaatcgaggcggcttgatcaaatcctaaggtcacaggaacctggatcgaaaatcata
atattttgctccacaaagaggatgtgtgatcagctggctcgaaacctagcacggcagtat
ggtgcttctgctattcatggtgataaatcacaagccgagagggattctgtgttgagtgaa
tttcgaagtggcagatgccctattcttgttgctactgatgtggctgcccgaggcttggac
ataaaggatatcagagttgtggtcaactacgatttcccaacaggtgttgaggattacgtc
catagaattgggagaacaggacgggctggagcgactggagttgcctatacattcttctgt
gatcaggattcaaagtatgcttcagatctcgtgaagattttggagggtgcaaaccagtct
gtttcgcaacagttgagagatatggtctcccgtggagggtatggtggaaggtcacggcgc
tgggcatcttcagatgactcttatggtggtcgaggatatgattcaggctatacttcaagg
tcgactgacaactataacagtggttatggcagtcagtctgggaatggttctagctttcat
agtagcttccataacagcaacagtggcaatcagtttggcgatacttctggcttccaaacc
agctttcataacagcagcagcaacaatcaaaccagtgacaatccaagctttcatgccagc
agcaacaacgatcaacctggtgatggtctcagctttcatgccaggttctatagctcttct
cgaggcagcgatcagagcagaacaaacaatgctggctttcgtgatagaagtaggagtcct
ccaagcaatcgcaaccatgaagatcctgggtccaaggctgttggtgtctccaactggtaa
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integrated database retrieval system
