KEGG   Oryza sativa japonica (Japanese rice): 4327802
Entry
4327802           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4327802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4327802
Spliceosome [BR:osa03041]
 Complex A
  U1 snRNP components
   U1 related factors
    4327802
 Complex B
    4327802
SSDB
Motif
Pfam: FF WW
Other DBs
NCBI-GeneID: 4327802
NCBI-ProteinID: XP_015620888
LinkDB
Position
1:complement(join(19746570..19746704,19747901..19748227,19748412..19748514,19750451..19750515,19751540..19751647,19751812..19751904,19751994..19752041,19752400..19752498,19752579..19752695,19752785..19752838,19752911..19753003,19753094..19753174,19753375..19753480,19753649..19753683,19753772..19753858,19753984..19754061,19754127..19754195,19754281..19754379,19756097..19756169,19756253..19756581,19756669..19756726,19756816..19756868,19757674..19757743,19757875..19757936,19758051..19758182,19758311..19758610,19758709..19758777,19758894..19758929))
AA seq 992 aa
MASNMQPSGPPQQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQ
AMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAVPMAYQPARPMSSGPLQPPATFSGG
HMPTMGGPIPPPSYTATLQYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSATMPSI
NSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGR
KYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPA
NQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIP
SVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEP
VTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQ
RKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPRERED
LFESYLMELQKKERARAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRL
EKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTR
WRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMT
TSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLY
SIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKA
RKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSK
DKKREKDKEKKHKRHHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENR
HKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
NT seq 2979 nt   +upstreamnt  +downstreamnt
atggcaagtaatatgcaaccttctgggccaccgcagcaatctaggccccctatgatgggc
tctagtgtcccaccacaaaatctgggacctccgatgcctatgcagtttaggccggtgatt
catcagcaacaacctcctcagttcatgcaaccggggcagcagtttcgacctgttggtcag
gccatgccaggagctaatattggcatgccaggtcagatgccacattttcagcaacctaca
cagcacttgcctcactctggtcaagttccacctgcatcacaagcagttcctatggcttat
cagccagctagacctatgtcatctgggcctctgcagccgccagcgacattctctggaggc
catatgcccaccatgggaggccctataccgcctccatcctatacggctacactgcagtat
caaccatcatctgttcctcctcccatagtgcaatcttggggtacagctccaggtcagaat
gtacctcttgtgcagcctgggcatcagccgatgtcatcttccgctacaatgccttcaatc
aattccagcgaaactagctcttcagactggcaagagcacacttcagctgatgggaaaaag
tactactataataagaagacaaggcaatcaagttgggagaaacctgctgagttgatgaca
ccgttggagagagctgatgcctctactgaatggaaagaatttactacacaagagggtcga
aagtactattacaataaggtgacaaagcaatccaaatggacgattccagatgagttaaag
attgcgcgtgaattagcagagaaggcgtcaaatccacgccctgatcaagaaacggaaaca
actgctggtgctccttctggacccacttcaaactctgtggaaccttcttctgtacctgct
aaccagtcctccacaacgattatgggtgctccaagtacacttgatgcagcagcgaactct
gttcctcctggtgctggcccttcgcacaatatggagaacacctccagttcatctaatact
gccatgcaaaatggtggtccaagtaccgttgttactcctgttataagcacagaaattcca
tcagttgcaagtgatgcagggattagcagagccaataacgaatacccatctctagctagc
actgctgacactcaaaatggagcatctgctgaagaattggaggaggccaaaaagaccatg
gcagttccagggaagatcaatgttactccagtagaagacaaaactagtgaagaagaacct
gtgacctatgctaataagttggaagctaaaaatgcgttcaaagctctgcttgaatcatca
aatgttgagtctgattggacatgggatcaggctatgagggtcatcataaatgacaaaagg
tatggtgccctcaaaactcttggggagaggaagcaagcttttaatgagtatctaaaccag
aggaaaaagcttgaagcagaagaaagacgtatcaaacagcggaaggcacgtgatgatttt
ttagctatgctagaagaatctaaggagcttacttcatcaacaagatggagtaaagcaata
actatgtttgaggatgatgaacggtttagtgctgttgagcgtccaagggagcgtgaagac
ttatttgagagctatcttatggaactacagaagaaggaaagagccagggctgctgaagag
cacaaaaggcacatagcagaatatagagcttttctcgagtcatgtgaattcataaagaca
agtacccagtggagaaaagttcaagaacgtcttgaggatgatgaacgctgttcccgactt
gaaaagatcgatcgactggagattttccaagagtatataagggatctggagaaagaagag
gaagagcacaagcggatacataaggaacaagtaaggaggcaagagcgcaaaaatcgtgat
gaatttcgcaagatgttggaagaacatgtagctgaaggaatgcttactgcaaaaactcgt
tggcgtgattactgtgcccaggttaaagattcctctgtgtacttggctgtggcctcgaac
ataagtggttcaatgccaaaagatctgtttgaagatgtaatggaggagcttgagaaacag
tatcaagatgacaaagcccgaattaaagaagcagtgaagtctggaaagattcctatgacg
acttcatggacactagaggatttcgaaactgctgttacggaggatgatactttgaaagga
ataacaaacataaacatgaagcttatttttgatgatcaagttgaaaggctcagggaaaag
gaggtaaaggaagcaaagaagcgccagcgtctgggtgaaaatttctcagatcttttgtac
tcaatcaaggaaatatcagcttcttcaacatgggatgattctaaagcactattcgaagat
agccaagagtacaaggcattggacagcgaaacatactctagagagcttttcgaagagtgc
gttgtccacttgaaagaaaggttaaaagagaaagagcgcttgagggaggaagaaaaggca
agaaaagagaaggaacgtgaagagaaagaacggaggaaagagaaagaaaagaaggagaaa
gaacgcaaagaaaaagaaagagacaaggagaaagaaagagaaaaggacaaaggaaaggat
cggtcgaggaaagatgagatggatattgatgctgttgatgcagatagccatggctcaaaa
gacaagaaaagagaaaaggacaaggaaaagaagcataagagacaccaccatgacactgca
gatgatgtgagctctgaaagggatgagaaggatgactctaaaaagtctcgtagacatagc
agtgatcgcaagaaatcaaggaagcatacccatgcttcggactctgatagtgaaaatcgg
cacaaaagacacaaaaaggatcgagatagctcccgcagaaatggcacacgtgatgacctt
gaagatggtgaacttggagaagatggggagattcattag

DBGET integrated database retrieval system