KEGG   Oryza sativa japonica (Japanese rice): 4327826
Entry
4327826           CDS       T01015                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03082  ATP-dependent chromatin remodeling
osa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4327826
   03083 Polycomb repressive complex
    4327826
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:osa03036]
    4327826
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     4327826
  Histone modification proteins
   HAT complexes
    HATB complex
     4327826
   HDAC complexes
    Sin3A-HDAC complex
     4327826
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     4327826
    PRC2.2
     4327826
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     4327826
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    4327826
  Chromatin remodeling factors
   NuRD complex
    4327826
   NuRF complex
    4327826
   NuRF complex (fruit fly)
    4327826
SSDB
Motif
Pfam: WD40 WD40_Prp19 CAF1C_H4-bd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_RIG_2nd WDR55 Beta-prop_EML EIF3I Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_TEP1_C WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_SPT8
Other DBs
NCBI-GeneID: 4327826
NCBI-ProteinID: XP_015621920
UniProt: B9EZ35
LinkDB
Position
1:join(30089370..30089680,30090414..30090477,30090657..30090743,30091120..30091182,30091429..30091494,30091598..30091699,30091894..30091969,30092515..30092716,30092979..30093060,30093164..30093237,30093386..30093497,30093603..30093677,30093830..30093891,30094570..30094669,30094807..30094908)
AA seq 525 aa
MLCSALAFGHKRGGISEREPRARVQSKRSSYDRESVTARGGSEAGAGDGGGGGRQRAAKG
ALEMKEKGSRAAVDERYAQWKSLIPVLYDWFANHNLVWPSLSCRWGPQFEKATYKNRQRL
YLSEQTDGTVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIR
ELPQNSKIIATHTDSPDVLIWDVEAQPNRQAQLAQMESRPDLVPPDSRPDLILRGHKDIA
EFALAMCPAEPYVLSGGKDKSVVWWSIQDHISALGDSSKTESSPGASGSKGKTANDKDSP
KVDPRGIFLGHDSTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGTGPAVKVEKAHGGDV
HCVDWNLHDVNYILTGSADNSVRMWDRRNLGSGGAGIPVHKFEGHKAAVLCVQWSPDKAS
VFGSSAEDGFLNVWDHEKVGNKKNPNAPAGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSD
DGESTGGGGTLQIWRMSDLIYRPEDEVLAELENFKTHLASCAPRS
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgctctgctctgcccttgcattcgggcacaagaggggtggcatctctgagcgggagcca
cgcgcaagggtccagagcaaacgctcctcatacgacagagagagcgtgacagcgcgaggg
ggttcggaggcgggagcgggcgacggcggcggcggcgggcgccagcgagcggcgaagggc
gcgctggagatgaaggagaaggggtcgagggcggcggtggacgagcgctacgcgcagtgg
aagtcgctcatcccggtgctctacgactggttcgccaaccacaacctcgtctggccgtcc
ctctcctgccggtggggaccccagtttgagaaggctacctacaagaatcgtcagcgtctt
tacctttcagagcagacggatgggactgtccctaatactctggttattgcaaattgtgaa
gttgtcaaaccaagggttgcagctgctgaacatatatctcagttcaatgaggaagcacga
tcaccttttgtaaagaagtacaagactataattcatccaggcgaggtgaacaggattagg
gagcttccgcagaacagtaagatcattgccactcataccgacagcccagatgttctcatt
tgggatgtcgaggcccagccaaatagacaagctcaactggcacagatggagtctcgtcct
gatttggtaccacctgactctcgccctgatttgatattaagaggacataaggatattgct
gagtttgcgcttgctatgtgcccagctgagccatatgtgttatctggaggaaaagacaaa
tctgttgtatggtggagcatccaagaccacatatctgcactgggagattcctcgaaaact
gaatcttctccaggggcatcaggaagcaagggaaaaactgcaaatgataaggatagtcct
aaagttgatcctcgtggtatctttcttggccacgacagtactgttgaagatgtccagttc
tgcccttctagtgcacaggagttttgtagtgtaggcgatgattcttgtcttattctttgg
gatgcccggagtggtacaggcccagctgttaaggttgagaaagctcatggtggtgatgtt
cattgtgttgactggaacctccatgatgttaactatatcttaactggttctgcggataat
tctgtccgtatgtgggaccggagaaatctgggttctggaggagctggcattccagttcac
aaatttgagggtcataaagctgctgttctttgtgttcagtggtcacctgacaaggcatct
gtatttggaagctctgcggaagacggcttcttaaatgtgtgggatcatgagaaggttgga
aataagaaaaatcccaacgcacctgctgggcttttctttcaacatgctggtcatagggat
aagattgtagacttccactggaattcttcggatccttggactattgtgagtgtgtctgat
gatggtgagagtactggtggaggtggaacattgcagatatggcgcatgagtgacctgata
taccgtccagaagatgaagttcttgcagagctggagaacttcaagactcacttggccagc
tgtgctccaaggagctga

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