Oryza sativa japonica (Japanese rice): 4328001
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Entry
4328001 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K14557
U3 small nucleolar RNA-associated protein 6
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
4328001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osa03009
]
4328001
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
4328001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP6_C
U3_assoc_6
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
4328001
NCBI-ProteinID:
XP_015625201
UniProt:
Q6YZN6
Q6YPH2
LinkDB
All DBs
Position
2:complement(join(194169..194258,194367..194550,194839..195011,195288..195770,195928..196584,197939..198412))
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AA seq
686 aa
AA seq
DB search
MADAVQYRLERMSDELDDLERRGLFTRAELAEVVRRRRDFEFRLRRRSPLRSDFLDYIAY
ELRLDALRDLRKRAIIRATPDTTDHDADATDNDSSKKKKKKRNKGKAKKWKKSVSDIAGV
LRVLDIYRMATVRYKGDLDLWFRYLEFCRDKRHGRMKQALAQAIRYHPKVPGLWIYAAAW
EFDQNLNVAAARALMQTGLRSCPESEDMWIEYLRMELTYLNKLKARKVALGEDVKTLQKK
NNDASTWKEENKELFMSLNEQDEGPKESGSQGVALEGKEDLFWQQGLLIIQTIYHGATKA
LPSSLTLRKKFLEILSSVDLAHSDELKVEVMDDLKKEFSDSEDYWDWLARLQLSDSTSSS
NLNRMEALSNKLNKSIQVYDEAVRRLPTSRMYSLYAKFWMGVLFADTEDSISLFHGGEFD
ASGFTSCILKVYQNAESSGCLTEDLACQYVSLYLRLGGLEEAPGRLEEARNLAKKLCNGP
LSHAADLWNLRASIEMKSLATSTGISSFSKENLSSLFDLFNVALPKLPIPEAEELWHTAM
KLFSHEKVYFEKLVKCAMLSLSSAGGNDCGASVSSAIVGWILQRDGIKQARKMYKRFLAL
PRPSFKFFQYCIELETNLASIGNQDSLVNARKLYDAALDLYPQERELWRNYYNMELKLGT
SETANAIYWRARKVLGDSSALDIPHS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccgtgcagtaccgcctcgagcggatgtccgacgagctcgacgacctcgag
cgccggggcctcttcacccgcgccgagctcgccgaggtcgtccgccgccgccgcgacttc
gagttccgcctccgacgccgctccccgctccgctccgacttcctcgactacatcgcctac
gagctccgcctcgacgccctccgcgacctccgcaagcgcgccatcatacgcgccaccccc
gacaccaccgaccacgatgctgacgccaccgacaacgacagcagcaagaagaagaagaag
aagaggaacaagggcaaggccaagaagtggaagaagtccgtctccgacatcgccggagtc
ctccgcgtcctcgacatctacaggatggccaccgtcaggtacaagggggacctcgacctc
tggttccgttacctcgagttctgtcgcgacaagcgccatggtcggatgaagcaggctctg
gcacaagctattcgttaccaccccaaggttcctgggctctggatctatgcagcagcatgg
gaatttgatcagaacttaaatgttgctgcagcacgtgctcttatgcagactggtcttaga
tcttgtccagaatcagaggatatgtggattgagtatcttcgcatggagcttacctatctt
aacaagcttaaggctcgaaaggttgctcttggagaggatgtgaagacactgcaaaagaag
aataatgatgcaagcacttggaaagaggaaaataaagaactgttcatgtcactgaatgaa
caagatgaaggtcccaaggagtctggctcacagggagttgctttggaggggaaggaagac
ctattctggcagcaagggctgctaatcattcaaaccatataccatggtgctacaaaagct
cttccttcaagcttaaccttgcggaagaaattcttagagatattgagtagtgttgaccta
gcacattctgacgaactgaaggtagaggtcatggatgacctgaagaaagagttctctgac
agtgaggactactgggattggcttgctaggcttcagcttagtgactcaactagttccagt
aatttgaatagaatggaagctttatcaaataaactgaataaatcaatacaggtgtatgat
gaagctgtcaggaggttgccaacttccagaatgtattccctgtatgcaaaattttggatg
ggtgttctgtttgctgatacagaagattccatctcattgtttcatggcggtgaatttgat
gcttcagggttcacttcatgtatactgaaagtctatcaaaatgccgaatcaagcggttgt
cttactgaagatcttgcttgccaatatgtgtctctttatttgagacttggaggtttggag
gaggcacctggaagattagaggaagctaggaatcttgccaaaaagctctgcaatggtcct
ctttcacatgctgcggatttgtggaacctgagagcatctattgagatgaagtcacttgct
acttctactggcatttcttcgttcagcaaggagaacttgagttctctatttgatctattt
aatgttgcacttccaaagttacccatacctgaggctgaggaattgtggcacacggccatg
aaattgttttctcatgagaaggtttatttcgaaaagctggtgaaatgtgcaatgttatca
ttaagttctgctggtggaaatgattgtggagcttcggtttcttctgctattgttggatgg
attttacaaagagatggtatcaagcaagctagaaagatgtataagagatttctggcttta
ccacgtccaagcttcaagttcttccagtactgcatagagttggaaacaaaccttgcatca
atcggaaaccaagacagccttgtgaatgctcgtaagctgtatgatgcagcgctcgatctc
tatccccaggaaagagaactttggaggaactactacaacatggagctgaagttgggaaca
tcagaaacagcaaatgctatatactggcgcgctcgtaaggtgctcggtgattccagtgcc
ctggacattccccacagctag
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