Oryza sativa japonica (Japanese rice): 4328058
Help
Entry
4328058 CDS
T01015
Name
(RefSeq) ATP-dependent helicase BRM
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4328058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4328058
03036 Chromosome and associated proteins [BR:
osa03036
]
4328058
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4328058
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
4328058
Chromatin remodeling factors
BAF complex
4328058
PBAF complex
4328058
GBAF(ncBAF) complex
4328058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
4328058
NCBI-ProteinID:
XP_015625274
LinkDB
All DBs
Position
2:complement(join(755768..756445,756769..757017,758026..758535,758671..760212,760306..760551,760739..760942,761258..761341,761453..761545,761682..761768,761887..761974,762179..762291,762589..763905,764044..765318,765812..765919))
Genome browser
AA seq
2197 aa
AA seq
DB search
MQPGEAPPSSGGSPATSPRPPPAVAQGQQQLGFRNQAMMHHHDQQQQQQQGYPSGAPHGM
MGGGGSSSFPPSSGPMPPFQGQRNMPLPGGPQGLAGGQQHNPTAMQQAYLQYMMQQQQQK
AHGMLLQQQQQAKMNMAGPSTRDQDVAANTAKMQELMSLQAQAQAQMFKRQQSEHLQQAE
KQAEQGQPSNSEQRSGDMRPPSMPPQGVPGQQLSSAGMVRPMQPMQGQAGMSNAGANPMA
MAQLQAIQAWAKEHNVDLSNPANVTLISQILPMLQSNRMAAMQKQNEVGMASQQQSVPSQ
MNNDAPGHSNFPSQGAPSKPRQPLPPSTSVSGGAEPKMMNMSNMQMQQQLAAHNRDSSND
RAARPAMSMGNGGQMMHMPQSSGHANKIPEQPNPKNANSEAMQMQYARQLQQANRATAPS
ANSGETGGSQAPNQAARPPMGFTKHQLHVLKAQILAFRRLKRGDKKLPPEVLDLIMSGPP
PDSQAQQVSGPPVTNRERSATSSADEHGRPVESGGIAPERSSLLKAPCLPKVEVSAPEDK
TIPASGPMQVMKASPKEPLRIGPVSMPEQTNTTLIKSEQDPERGIQRTPGRSDYNGERGK
SLPAESGSADAEQAKRAASSSSVPTPNRDVSRKYHGPLFDFPSFTRKHDSMVSANYNSNL
ALGYDVKDLLAQEGMIVLGKKREDNLKKISGLLAINLERKRIQPDLVLRLQIEEKKLKLL
EFQARMRDEVEQEQQEIMAMPDRVYRKFVRQCERQRVELTRQVQQMQKASREKQLKSIFQ
WRKKLLEAHWAIRDARITRNRGVAKYHERMLREFSKKKDDDRNKRMEALKNNDVERYRQI
LLEQQTSVPGDAAQRYNVLSSFLTQTEEYLYKLGGKITAAKNHQQVEEAANAAAAAARAQ
GLSEEEVKAAAQCAGQEVMIRNTFSEMNAPRENTSVNKYYTLAHAVNERVTRQPSLLRAG
TLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMSLIAYLMEFKGNYGPHLIIVPN
AVLVNWKSELLNWLPSASCIFYVGAKDQRQKLFSQEVLAVKFNVLVTTYEFVMYDRSKLS
RIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV
FDNRKAFQDWFSKPFQRDVPTHSEEEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG
SLPRKESIVLRCRMSGIQGAIYDWIKSTGTIRVDPEDEKARIQRNAMYQAKTYKNLNNKC
MELRKVCNHPLLSYPFMNYYGKDFIIRSCGKLWNLDRILIKLHRSGHRVLLFSTMTKLLD
ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNLQSADT
VVIYDPDPNPQNEEQAVARAHRIGQTRDVKVIYMEAVVDNISSYQKEDELRNGGSGDLED
DLAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY
QETVHDVPSLQQVNRMIARTEEEVELFDQMDEEFDWTGDMMKHNQAPKWLRVSSTELDAV
VASLSKKPLRNMAAGGISLDTNEKLEKRRGRPKGSGKYSIYREIDDDDFEESDDDSEERN
TSSLPEEGEIGEFEDEEDNDDSVPDNKDQSEEEEPINDEGYDFSHGMGRRKAHRSEEAGS
TGSSSGGRRLPPPAPSSSSKKLRSLSALDSRPGALSKRTADDLEEGEIALSGDSHLDLQQ
SGSWNHERDDGEDEQVVQPKIKRKRSIRIRPRPNAEKLDDRSGDGTVPQRGVHLAFQGDG
DYDSQFKSEQAFADPASRQQDTVHRTVKQKRNMPSRKAPPATKAGKMTQLSGSGEGSAEH
SKENWSNKVIESAGPNSSGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNE
NSSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAETL
HNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEAEQH
GSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFIVKKKR
DRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSAGWGAHSV
QQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM
NT seq
6594 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccggcgaggcacccccctcctccgggggctcgccggcgacgtcgccgcggccg
ccgccggcggtggcgcaggggcagcagcagctagggtttaggaatcaggcaatgatgcat
caccatgatcagcagcagcagcagcagcaagggtacccatcgggcgcgccgcatggtatg
atgggaggtggtggcagcagtagtttccctccgtcctcaggcccaatgcccccgttccag
ggccagaggaacatgccgctacccggtggaccgcagggtctggctggaggccagcagcat
aacccgacggcgatgcagcaagcatacctgcagtacatgatgcagcagcagcagcagaag
gcccatgggatgctcctccagcagcaacagcaggccaagatgaatatggcagggccatct
acaagggaccaggatgtggctgccaacactgcaaaaatgcaggagcttatgtcccttcag
gctcaggcccaggcccagatgttcaagagacaacaatctgagcatcttcaacaggcagag
aagcaggcggagcaagggcagccgagcaatagcgagcaaaggagtggtgatatgaggcca
ccttcgatgccaccacaaggggtccctgggcagcagttgtcatcggcgggtatggtgagg
ccgatgcagccaatgcaagggcaagctggcatgagcaatgctggagctaacccgatggca
atggcccaacttcaagctatccaggcctgggccaaagagcacaatgttgacctgtccaat
cctgcaaatgtgactctcatttctcaaatcctaccaatgttgcagtcaaacagaatggct
gccatgcagaagcagaatgaggtaggcatggcgtcacagcagcagtctgtaccctcacag
atgaacaatgatgcaccaggacatagtaattttcctagtcagggtgccccatcgaagccc
cgacagcctcttccaccaagcacctctgtttctggtggggcagagcctaagatgatgaat
atgagcaacatgcagatgcaacaacagttagcagctcataacagagatagctcgaatgac
agggctgcgaggccagccatgtcaatgggcaatggtggacaaatgatgcatatgccccaa
agttctggacatgcaaacaagattcctgagcagcccaatccaaaaaatgcaaattccgaa
gcaatgcagatgcaatatgcaagacagttgcagcaggctaaccgagctactgccccttca
gcaaattctggtgaaacaggaggatcacaggccccaaatcaagctgcccgaccacctatg
ggtttcaccaaacatcagcttcatgtacttaaagctcagatattagcttttcggcgtctg
aagcgtggtgataagaagctaccaccagaagttcttgatttaatcatgtctggaccacca
cctgattcacaagcgcagcaggtttctggacctccagtaacaaaccgtgaaagatctgct
acaagcagcgctgatgaacatggaagacctgtggagagtggtggtatagctcctgaaaga
tcttccctgttgaaggcgccctgtttaccaaaggtggaggtttctgctccagaagacaaa
actattcctgctagtggtcccatgcaagtgatgaaagcttcacccaaggaacctcttaga
attggaccagtttcaatgcctgaacaaaccaacaccaccctgattaaatctgagcaggat
ccagaaaggggtatccagagaacacctgggagaagtgattacaatggtgaaagggggaaa
tctttgccagcagaaagtggttcagcagacgctgagcaggcaaaaagagctgcctcatca
agtagcgtgcctactcccaacagagatgtttcaagaaaataccatgggccactatttgac
tttccatcctttaccaggaaacatgattccatggtgtctgcaaattacaacagtaatcta
gcactcggttatgacgtgaaggatttgttagctcaggaaggcatgatagttcttggcaag
aaacgggaggataatttaaaaaagatcagtggcttgcttgcaattaatctagagaggaaa
aggatccaaccagatcttgttttaaggctgcagattgaagaaaagaagctgaaactcctt
gaatttcaggctcgtatgagggatgaagttgaacaggagcaacaagaaataatggcaatg
cctgatagggtgtacagaaagtttgtcagacaatgtgaacgccagcgtgttgagcttaca
aggcaagttcagcagatgcagaaagcctcaagagaaaagcagctcaaatccattttccag
tggcgcaagaagcttttggaggcacactgggccattcgtgatgcacggattactcgtaac
cgaggggtagccaagtaccatgaaaggatgctgagggaattctcaaagaaaaaggatgat
gatcgaaacaaaagaatggaggcactgaaaaacaatgacgtggaaagatatcgtcaaata
ttattggaacaacaaaccagtgttcctggcgatgcagctcaaagatacaatgttctatct
tctttcttgacccagactgaggagtatctctataaacttggagggaaaataactgctgcc
aagaatcatcagcaagttgaagaggcggcaaatgctgctgctgctgctgcccgagcacag
ggtctttctgaagaagaagtgaaggctgctgcacaatgtgctggtcaggaggttatgata
aggaacacattctctgaaatgaatgcgcccagggaaaacacatctgttaataagtactac
acattggctcatgctgtgaatgagagagttacaaggcagccctcactgctgcgagcagga
acgttaagggactaccagctggtgggccttcaatggatgctttccttgtacaataataag
ttgaatggtattttggctgatgagatgggtcttggcaagaccgtacaggttatgtctctg
attgcatacttgatggaatttaaagggaattatggaccacatctcataattgtaccgaat
gctgtcttggtcaactggaagagtgaattgctgaactggttgccatctgcatcttgcatc
ttttatgttggtgcaaaggatcaacgtcaaaaattattctctcaggaggttctggctgtg
aaattcaatgttcttgtaacaacatatgaatttgttatgtatgaccgttccaagctttca
agaattgattggaagtacattattattgatgaggcccaacggatgaaggacagagagtca
gtcttggcgcgagatcttgatcgttatcgttgccaacggcgtttgcttctcactggcact
cctctacagaatgatcttaaggagctttggtccctcctaaatttgttgctaccagaagta
tttgacaaccgtaaggcatttcaagattggttctcaaaaccttttcagagagatgttcct
acacatagtgaagaagaagatgattggctggaaactgagaaaaaagtaattattattcat
aggctgcatcaaattttggaaccttttatgctacgaaggcgtgttgaagatgttgaaggc
tcacttccaagaaaggagtcaattgttttgaggtgcagaatgtctggtattcaaggtgct
atatatgattggataaaatccactggcaccatcagggttgatcctgaagatgagaaagca
cgtattcagaggaatgcaatgtaccaggctaagacatataagaatctcaataacaaatgc
atggagctgaggaaagtttgcaaccatccattgctgtcatatccttttatgaattactat
ggaaaagattttataatcagatcttgtgggaagttgtggaatcttgataggattttaatt
aagcttcataggtcaggtcaccgtgtactccttttcagcactatgacaaaacttcttgac
atcctggaagaatatttgcaatggaggcaacttgtttacagaagaattgatggaacaact
agcttggaagatcgtgaatcagcaattgttgacttcaacaggcctaattctgattgtttt
atattcttgcttagtattcgggctgctggcaggggtctgaatcttcagagtgcagacact
gttgtaatttatgaccctgatccgaatccacaaaatgaagagcaagcagttgctagggcc
catcgtatagggcagactagggatgtaaaagttatttacatggaggctgttgttgataac
atctcaagttatcagaaagaggatgagttgaggaatgggggaagtggagatctggaggat
gatcttgcgggaaaggacaggtacatgggttcaatagaaagtctcatccgcaataatatc
caacagtacaaaattgacatggcagatgaagtcattaatgctggtcgatttgatcaaaga
acaacccatgaggaaaggcggatgactttggaaacactcctgcatgatgaagagagatat
caagaaactgttcatgacgttccttcactacagcaagttaaccgcatgattgctcggact
gaagaagaagttgagctatttgatcagatggatgaagaatttgattggacaggagatatg
atgaaacacaatcaagctcccaagtggctccgtgttagctccacggagcttgatgctgtt
gttgcgagtttatccaaaaagcccttgagaaatatggcggctgggggaatttctcttgac
actaatgaaaaacttgagaaacgaagggggcgacctaaggggtctgggaagtactccatc
tacagggagattgatgatgacgattttgaggaatctgatgatgattctgaagagaggaat
acctcatctctgcctgaagaaggggaaataggagaatttgaagatgaagaggacaatgat
gattcagtgcctgataataaggatcaatcagaggaagaagagcctatcaatgatgaaggg
tatgatttttcacatgggatgggacgcagaaaagcccatagatctgaagaagctggttca
acaggatcttcatctggtggccgtagattgccaccacctgcaccttcctcctcttcaaaa
aaattgcggtctttgtctgcattagattcccgcccgggtgctttgtcaaagagaactgca
gatgacctagaggaaggagaaattgcattatcaggggattcacatctggatctccagcag
tcaggcagctggaatcatgaacgagatgatggtgaggatgaacaggtagtacagccaaaa
ataaagcgcaagcggagtatccgtattcgtccaagacctaatgcagaaaaactggatgat
agatccggtgatgggaccgtccctcaacgtggtgttcatcttgcatttcaaggagatggt
gattatgattcacaatttaagtctgagcaagcctttgctgatcctgcttccaggcagcaa
gacacagttcatcggacagtaaaacaaaagcgtaacatgccatctagaaaggctccccct
gccactaaggctgggaaaatgactcagctgtctggatctggtgagggatctgctgaacat
tctaaggaaaattggagtaacaaggtgatagaatctgctggtccaaattcaagtggaaca
aagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggagg
attgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgag
aattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacga
gttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctg
aaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctc
cacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagct
aagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatca
acaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcat
ggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcc
cacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttc
acggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagaga
gatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccg
accaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaa
agagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtg
cagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaa
cctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga
DBGET
integrated database retrieval system
